Protein

MCA_02391_1

Length
1,012 amino acids


Description: Retrotransposon Ty3/Gypsy Gag-Pol polyprotein

Browser: contigB:1148390-1151610-

RNA-seq: read pairs 354, FPKM 4.3, percentile rank 16.4% (100% = highest expression)

Protein function

Annotation:Retrotransposon Ty3/Gypsy Gag-Pol polyprotein
EGGNOG:0PGPZto reverse transcriptase
SGD closest match:S000007347TY3B-GTransposon Ty3-G Gag-Pol polyprotein
CGD closest match:CAL0000191508ORF298Uncharacterized protein

Protein alignments

%idAln lengthE-value
A0A060T683_BLAAD41.88%10410.0ARAD1B13926p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13926g PE=4 SV=1
UniRef50_A0A060T68341.88%10410.0ARAD1B13926p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T683_BLAAD
B5FVH8_YARLI34.48%10440.0YALI0E14388p2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E14388g2 PE=4 SV=1
YG31B_YEAST36.42%9501e-175Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
A0A167D9C8_9ASCO31.76%9101e-121Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_901 PE=4 SV=1
A0A1D8PI28_CANAL23.85%7385e-49Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ORF298 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0672

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 700 800 900 1012

Detailed signature matches

    1. PF00078 (RVT_1)
    2. PS50878 (RT_POL)
    1. SSF53098 (Ribonucle...)
    1. PS50994 (INTEGRASE)
Unintegrated signatures no IPR
Unintegrated signatures
  1. SSF56672 (DNA/RNA p...)
  2. cd01647 (RT_LTR)
  3. cd09274 (RNase_HI_R...)

Residue annotation

  1. putative NTP bindi...
  2. putative active si...
  3. putative nucleic a...
  4. RNA/DNA hybrid bin...

Protein sequence

>MCA_02391_1
MILGTPFTAEFADFVDLKSFSVAGVGSVADDPLFVSAIEFERLAKSKENAIGICVLKFDEPVKEPASLEVLPFDASEYKD
VLTNDPPTGLPPERDVTHPIDVVPGSTPPYRSYYRLSKAESDYLTEELSKMANTGMIRPSSSPYSAPVLFVKKKDGSLRL
CVDYRMLNNITIKNRYPLPFIEEMLNKVEDARVFSKLDLRSGYHQIRIRPQDIEKTAFSTSTGHWEFLVMPFGLTNAPAT
FQNFMNDIFRPYIDKFEEHVQHLKKVLDVLKENKLVANLKKCEFFKTELDFLGYKLDAKGIHITDEKVRAVKEFPIPKTV
KECQRFLGMTNYYRKFVPNFSGIAAPLHDFTSEKTKWTETQTQAFETLKEKLIDAPILISPQTHLCSRLLGVIAYFSRKL
KPTEVNYAVRDLEFLAVVDALQHFRPLLLGRHFILRTDHFSLTQLQSQTKPPHGRIARWFDALADYDFTTQYIKGKQNVV
ADALSRQPSVNAIDTNDATNEEEELMSTPSDDIIRRVRDKLDSDDYFANVIRILNDENDPAHRTISSKYHLDDGLLYFKI
TPVLDSNQYRLCIPDCSLRADLVAMAHTNGHYGPYRTFLRLAHFYYWPVMFPEVKRIVDHCPDCAYTQPNKKTHGYLQPL
QIPQQRWDSISLDFVSGLPEVDGYDMILVVVDRLSKRARFLPTTKTLTGKDCAYLLHREIFKIHGFPLDIVSDRDVRFQE
LFWKTMHLINGTKNLQSTSFHPETDGQTERVNRVLRALMSSHASLPFMADLGRVPRNPSFITPPMSFTGKIEAEDFAIIT
QAILARTRDFIAEAQDKQSLYANKTRTALVLKENDEVLVRYAYSLAPNSNKYIDSVNLFTGPYRVVKKIDDNVYEIDLPE
YDRSRRNINVSRLKKFEPSEAFPRSPPLNLEAVKARITEISGIVGETDDAYLLQFSNCRPGHIVAVNKQVLNLLSPAEQE
RIKRNANAMTRNLMTHPDLAKEQFTHNQHLWRNQALSFFNQEQINHMNRDDS

GO term prediction

Biological Process

GO:0015074 DNA integration

Molecular Function

GO:0003676 nucleic acid binding

Cellular Component

None predicted.