MCA_02300_1

Protein

Length

1,787 amino acids

RNA-seq: read pairs 662, FPKM 4.6, percentile rank 16.8% (100% = highest expression)

Protein alignments

	%id	Aln length	E-value
MIA_04025_1	27.67%	712	1e-25	MIA_04025_1
UniRef50_UPI0005537CA0	37.50%	136	1e-12	PREDICTED: splicing factor, arginine/serine-rich 15-like, partial n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=UPI0005537CA0

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0939

Protein family membership

None predicted.

Domains and repeats

None predicted.

Detailed signature matches

no IPR

Unintegrated signatures

CYTOPLASMIC_D... (C...)

1,787 - 1,787

PHOBIUS
CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
Coil

1,673 - 1,693

COILS
Coil (Coil)
NON_CYTOPLASM... (N...)

22 - 1,769

PHOBIUS
NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
SIGNAL_PEPTIDE (Sig...)

1 - 21

PHOBIUS
SIGNAL_PEPTIDE (Signal Peptide)
SIGNAL_PEPTID... (S...)

17 - 21

PHOBIUS
SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
SIGNAL_PEPTID... (S...)

6 - 16

PHOBIUS
SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
SIGNAL_PEPTID... (S...)

1 - 5

PHOBIUS
SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
SignalP-noTM

1 - 21

SignalP euk
SignalP-noTM (SignalP-noTM)
TRANSMEMBRANE (Tran...)

1,770 - 1,786

PHOBIUS
TRANSMEMBRANE (Transmembrane region)
mobidb-lite (disord...)

709 - 780

MobiDB Lite
mobidb-lite (disorder_prediction)

1,244 - 1,588

MobiDB Lite
mobidb-lite (disorder_prediction)

899 - 1,081

MobiDB Lite
mobidb-lite (disorder_prediction)

Protein sequence

>MCA_02300_1
MVGKPILYAFAAALTARGIFAAEEVVEKIELTLEANLPTDDSESVIEVEPTLSPPSYDVMQNNVETVQVEAIPDSTLFET
PFLDKAQVTNMPSTNDEETQCLNICADAAFLAKAGGNLCNSADSKSFYNIAQECSKCACKVWSIFEDKDALISGLKQCSI
NIPSCKPEDSNISKRGFDFKGKNKKKCLYWKTVTSKRCRPIKNYPKCNSGYVKKTIKIPAATYPASKYYGYCVTYYPATT
FPATSVVLPACNARKTITVKPTKPCIIFKPTCNPGYNPKTVKIASKVFPASTVTKQNVVKVYKYVSFAAYQTVVPACNKR
KTTWVIPQRPSFKPTCVPGYESKQTSVPAVTLSEKVSTGNNGIVTIYKPMVYHGYKTILKPCESRKTITVEPSRPPKPTE
CVPGYVERKMWVPAVTIKQDIVTGQNNVVTVTKQQVYNGYYTALKPCNTRSTTTITPTRLPFKKTCAPGYHSTDFVVPAT
TIGRWQWIGKDNVVTLRIEQTFPAFTTALPPCQTASSITVVPPRPSITSECANGYESKTVTVSEQTFAASTVTGENNIIT
IYISTSYPGSTVVLPPCEFLSRTTVVPPKPSYPGSCASGFSSDIVTVPAMDYQASTITGGNSIVTVYLSTSYPAYTTNLS
PCADRKTITIPQPPPPPPTQTCVVGTNSGPLTIPGTSVSGATVTGTNDVVTVYPPTTYEDATTMVPGCTEEELSDSSSDL
TNSTGVPSSGIPSSSVSIGPSDSDSTGVPSTGVPSSDVPSSGVSTGPSESDSTGVPSTATETTFTVSQAITTVTSDIPSI
EYTCISGYTSKLITVPGTNLQGSTITGTDNVVIVYQSTSYSQYIITLPPCDERKTVTIPPTPPVPPTQTCVVGSESGYIT
IPGTSIPGTTVTGTDDLVTVQPPTSYEESTTMVPGCSTGTKPSSGVSTGPSDSDSTGIPSTGVPSTGIPSTDVPSSGVST
GPSYSDSTGVPSTGVPSTGVPSTDIPSSDVSSSSVSTGPSDSDSTGVPSTGVPSTGVPSSDVPSSGIGTDPSYSGSTDVP
STGVPSTGVPSTGVPSTGVPSTGVPSSAASTGPSGSDSSLYHSQTTIEFSTIFSTYTATQSTIVTSSILTQTNTLVSIVT
FDSDSSYSTVSKTITKPSLSITCCPGYTSSILTVTGKTILGSTVTGGDGVVTIFESGIYPGYEITLPPCDVRETVTISPS
LSLPIETCIIGTQSTVHTVPGTTIIGTTVTGGDDTVTVIPSTSYSDSTMVIPGCSTYQTSTDTSIKPQPSTPVSTGPSGP
SESSSAPTGPTGPTDTSSAPTSPTGPSGPSESSSAPTGPTVPTDTSSAPTGPSDPSDPSDPSGPTESSSAPTGPTDTSSA
PTGPTSPSGPSESSSAPTGPTGPTGPTGPTDTSSAPTGPTGPSGPSESSSAPTGPTGPSGPSESSSAPTGPTGPTGPTDT
SSAPSGPTGPSESSSAPTGPSGPTGPTGPSDTSSAPSGPTGPSESSSAPTGPTGPTGPTGPTDTSSAPTGPTGPSGPSES
SSAPTGPTGPSGPSESSSAPTGPTGPTGPTDTSSAPSGPTGPSESSSAPTGPSGPTGPSDTFYSPTGPQTTFSTATTICT
DATCTCKPQPPVCVKYKIFKAFYCGEWIIYKMCETYALIGCGYDKLSKRENPATPVPATTTLTDISPNAATLLAKEQKAN
EILSSAIENLRHEDTAANYKVMEPSEIDFSQIENAQVVEHVAILEEPFLNSELGNRDYDRIDTSNNPQAQLSLDKRDLVA
PENSSYKLEAKPLVVSYILFIFLVFIF

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.