MCA_02297_1

Browser: contigB:843851-851457-

RNA-seq: read pairs 8565, FPKM 42.0, percentile rank 61.5% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0261

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   2,516 - 2,516

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. Coil
   2,514 - 2,516

   COILS
   Coil (Coil)
3. NON_CYTOPLASM... (N...)
   22 - 2,492

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
4. SIGNAL_PEPTIDE (Sig...)
   1 - 21

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
5. SIGNAL_PEPTID... (S...)
   17 - 21

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
6. SIGNAL_PEPTID... (S...)
   6 - 16

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
7. SIGNAL_PEPTID... (S...)
   1 - 5

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
8. SignalP-noTM
   1 - 21

   SignalP euk
   SignalP-noTM (SignalP-noTM)
9. TRANSMEMBRANE (Tran...)
   2,493 - 2,515

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
10. mobidb-lite (disord...)
    1,626 - 1,649

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    1,677 - 2,329

    MobiDB Lite
    mobidb-lite (disorder_prediction)

Protein sequence

>MCA_02297_1
MVGKPFLIALMAALSAQSVSAAADVESVVELTMEASFDTDKPDEPVAVVKPTLTENLAEKETEVDNQILETVSVEAVPDS
TLFESNTLPPSEITGKPNANEAETECLNVCANAAFLAGLGGNICNPSDPKSFYNVAQQCSGCISKIWSIFDDKETVLRGL
EQCNLPPPSGNADESKQIEKRAFEDGMDLDKRCLFWKTVTSRRCRPVNNQPRCNPGYLAKTVIYPAQTYYASRYYGWCVT
YYPGTVFPRSTQVIPACTNRRTCTVRPTRPCVNIKPTCNPGYASKLVTVAAQVFPASTVTRYNTVTVHQYASYPAYVTTI
PACSQRRTVTLCVTRPTPNQTCAPGYQSKTTDIPAQTITRSVWTGANDIVTVRTAAVFNGYRTVLQPCSTRKTVTVPATP
PTFATTCANGYTSQFVNIPATTVSYSSWVGNDGVVTIRTAHNFPASSTKLPPCSTRKTVTIHPTPPAAPSSCAPGYSSKV
VTIPETTVPYSSWNGNDNVATIRPVKTFPASSVTLGPCSTRKTTTICPTRPPATAASCKPGYESGVVTIPSTILTSTEYA
GTDGTYTVQISKSFPVSAVFVPPCETRTTITLDPAKPTIASCFKGYESGTVTIDATTLKQSTVINQDGVFTVYRSTSFPE
YTTVLPPCCHRLSTTITPTQPTIDTSCAKGYTAGPVTIPATTFTASTFTGSNSVVTIRISTTFPAFVTTLPACDVRKTTT
VTPTSPSFTTTCTPGYTSGIISVPPLTISSSTVTGKDEIVTVHEAEVFPGFNTVLPGCSTRKTITHVPERPPFVSKCTPG
YESGVVTIPAVTFTASVVTGTDETVTVHKATVYPPGTTNLPACETRVTTTLEPSKPSITETCASGYASSTVTIPGTTFTA
STKTGSNNIVTVYKAATYPASSTVLEACTKRRTVTLPQTIEVTETCKPGYTSGEVIIPGTSFTASITTGKDDIVSTWPAT
SVPAITTSLPACSTRETVYSDYPKPTPKVSCAEGYVSGPVTIPATTFTASTVTGKNQIVTIHKSTSFPVSVVTLPPCSIR
QTLTIVPTQPTITNTCAPGYTSGPVEIPATTFTASTFTGKDEVVTVQEAKTFPASKTTLPPCDKRTTTTVVPPRPSITET
CAPGYVSGPVVISGKEFEAKTSTGSDETVTVHKYTSYPPTTVTLKPCSTRKSTTIVPTKPAFQTSCIPGYNSGVVTVPAT
SFPGSTIVGSDEVVTIHQSATFTAYTTSLPPCDKRTTTTITRTQPKPETSCAKGYTPGLVTISATTFPATTTTGANEIVT
ITLSASFPIFSTSLPACDTRSTTTFVPTKPPNKATCAPGYTSGTLTFAAVTFSSSTVTGEDEVVTVHSGIVYPAVTTVLK
PCDTRKTTTITRTKPLVTASCVPGYVSGDYTVTGVTLEASTVTGLDETVTIHEATSFPLYTTKLPPCDKRSTTSVVQTKP
KITASCTPGYVSGPISVPAVTIPATTETGKDEVITIHLSTSFPAYVTTLPPCDKRQTTTVTQAKPTLDTTCAPGYVSGPV
TVSATTIAASTVTGKDEIVTVHEAATFTGYTTTLPPCDKRQTTTVTQAKPTLDTTCAPGYVSGPVTVPATTITASTVTGK
DEIVTVHEAATFTGYTTTLPPCDKRSTVTVPPTVPPQPTTQTCVEGTNSGKLTFPGTSITDSTVTGTDNVVTVYPGTSFE
PSTTMLPGCTTSTSTSTESSTSETETPTSIIGEPHSSSSTEGPEPTDSGVPSGSSSVPAESSDVPSGSSEGPEPTDSGVP
SGSSEGPEPTDSGVPSDSSEGPEPTDSGVPSGSSEGPEPTGSGVPSGSSEGPEPTDSGVPSGSSEGPEPTDSGVPSGSSE
GPEPTDSGVPSGSSEGPEPTDSGVPSGSSEGPEPTNSGVPGESSGVPSGSSGVPSGSSEGPEPTDSGVPSGSSSAPAESS
DVPSGSSEGPEPTNSGVPSGSSEGPEPTDSGVPSGSSEGPEPTNSGVPSGSSEGPEPTDSGVPSGSSSVPAESSGVPSGS
SSAPAESSDVPSGSSEGPEPTNSGVPSGSSSVPAESSGVPSGSSEGPEPTDSGVPSGSSSVPAESSGVPSGSSEGPEPTN
SGVPSGSSEGPEPTDSGVPSGSSSVPAESSGVPSGSSEGPEPTDSGVPSGSSSVPAESSGVPSGSSEGPEPTNSGVPSGS
SEGPEPTDSGVPSGSSSVPAESSGVPSSSSEGPEPTDSGVPSGSSSAPAESSGVPSGSSEGPEPTNSGVPSGSSSVPAES
SGVPSGSSEGPEPTNSGVPSGSSEGPEPTDSGVPSGSSSVPAESSGVPSSSSSVSEEPSSSSSSSAPATTSSTTPVSVPP
TKTSSCTKCTCTPQPPVCVKYDIYKAFYCGEWIMYKVCSNFAFIGCGYDNIEKREVSGNAPVAVTTTLTDLPDEEATALA
DVTKIEKAVTSVMDSLKTNVGEGIKIMDPSEIDFAKIEQPVIVSKIEKPALVKPSAEGGIVKRDESATTTVPKVTGTKNI
TTTSAPAVQATSGAIRIEVFTFFYAFIALTAGLIMV

GO term prediction