Protein
MCA_02177_1
Length
521 amino acids
Gene name: PRP21
Description: Pre-mRNA-splicing factor PRP21
Browser: contigB:474349-475915+
RNA-seq: read pairs 781, FPKM 18.5, percentile rank 39.3% (100% = highest expression)
Protein function
| Annotation: | PRP21 | Pre-mRNA-splicing factor PRP21 | |
|---|---|---|---|
| KEGG: | K12825 | SF3A1 | splicing factor 3A subunit 1 |
| EGGNOG: | 0PG4Z | PRP21 | splicing factor |
| SGD closest match: | S000003739 | PRP21 | Pre-mRNA-splicing factor PRP21 |
| CGD closest match: | CAL0000181890 | orf19.4659 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03984_1 | 51.60% | 500 | 5e-151 | MIA_03984_1 |
| A0A0J9X9T8_GEOCN | 56.69% | 284 | 3e-106 | Similar to Saccharomyces cerevisiae YJL203W PRP21 Subunit of the SF3a splicing factor complex, required for spliceosome assembly OS=Geotrichum candidum GN=BN980_GECA06s02518g PE=4 SV=1 |
| UniRef50_A0A0J9X9T8 | 56.69% | 284 | 7e-103 | Similar to Saccharomyces cerevisiae YJL203W PRP21 Subunit of the SF3a splicing factor complex, required for spliceosome assembly n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X9T8_GEOCN |
| A0A1E3PGS0_9ASCO | 37.45% | 502 | 2e-85 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52267 PE=4 SV=1 |
| A0A167D095_9ASCO | 49.47% | 281 | 1e-81 | Prp21p OS=Sugiyamaella lignohabitans GN=PRP21 PE=4 SV=1 |
| A0A060T0P9_BLAAD | 50.87% | 289 | 2e-81 | ARAD1C10010p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C10010g PE=4 SV=1 |
| Q6CDU9_YARLI | 35.06% | 482 | 2e-68 | YALI0B21032p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B21032g PE=4 SV=1 |
| A0A1E4TDZ0_9ASCO | 33.85% | 260 | 2e-43 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_98053 PE=4 SV=1 |
| A0A1D8PL91_CANAL | 30.60% | 268 | 7e-35 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4659 PE=4 SV=1 |
| PRP21_YEAST | 28.65% | 171 | 7e-12 | Pre-mRNA-splicing factor PRP21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP21 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0278
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
350
400
450
521
Detailed signature matches
-
-
PF12230 (PRP21_like_P)
-
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_02177_1 MSETIQQPYIQEDSSTAPTETKQQYINGVAVPKGVTIPPPEIRNRIEKTADYVSRRGRDFENRIRENEQQNPKFSFIYDN DPYFPFYEWRVEQLEANGPSLNNSIQNGQSATTAQPTGPPKPEPFEFSYNLPPISAQDFDIIKLTALFVARNGQHFLSSL SHAESRNYQYDFLKPAHSFYPLFTHLVEQYKKVIHPSPKIMEKIKKGIKDPYSIINKARIRAEWNAHQESETKKASEEAE KEREAYAQIDWHDFVVVETIKFTNADEKANLPVPKSKAELEFASIEQKKMSRLKIEEAAPDFDQDEEEERMRKRHLQSLQ EQQQQQQQVSSLPQRPSEPPSSSVSPPANEPDMILPPPPGKIKAAGTSRRNKQKSSLQQNTPLMSQSPITGEMVPSSEYS EHMRISLLDPKWKEQKTIAESRQSTTNLDQTDVVANIKRLASSFHQEGDNDDVGSSTINDEHGYPNKRSKTEVQWDGYKS SRKLVIQQAKSQRKTKAELIEEQKREEERLNKIGPGPKPSQ
GO term prediction
Biological Process
GO:0006396 RNA processing
Molecular Function
GO:0003723 RNA binding
Cellular Component
None predicted.