Protein
MCA_02160_1
Length
1,182 amino acids
Browser: contigB:407507-411276+
RNA-seq: read pairs 1392, FPKM 14.5, percentile rank 33.3% (100% = highest expression)
Protein function
| KEGG: | K14327 | UPF2 | regulator of nonsense transcripts 2 |
|---|---|---|---|
| EGGNOG: | 0PGB8 | FG01948.1 | nonsense-mediated mRNA decay |
| SGD closest match: | S000001119 | NMD2 | Nonsense-mediated mRNA decay protein 2 |
| CGD closest match: | CAL0000178928 | orf19.864 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03976_1 | 52.28% | 1161 | 0.0 | MIA_03976_1 |
| A0A0J9XKG3_GEOCN | 39.66% | 643 | 2e-135 | Similar to Saccharomyces cerevisiae YHR077C NMD2 Protein involved in the nonsense-mediated mRNA decay (NMD) pathway OS=Geotrichum candidum GN=BN980_GECA24s00923g PE=4 SV=1 |
| UniRef50_A0A0J9XKG3 | 39.66% | 643 | 5e-132 | Similar to Saccharomyces cerevisiae YHR077C NMD2 Protein involved in the nonsense-mediated mRNA decay (NMD) pathway n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XKG3_GEOCN |
| A0A167FCQ0_9ASCO | 40.23% | 440 | 3e-85 | Nmd2p OS=Sugiyamaella lignohabitans GN=NMD2 PE=4 SV=1 |
| A0A060TJP4_BLAAD | 36.28% | 430 | 7e-79 | ARAD1D48532p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D48532g PE=4 SV=1 |
| A0A1E3PGG6_9ASCO | 29.01% | 655 | 1e-69 | ARM repeat-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52738 PE=4 SV=1 |
| Q6C4Q1_YARLI | 28.45% | 471 | 2e-50 | YALI0E24629p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E24629g PE=4 SV=1 |
| NMD2_YEAST | 27.57% | 428 | 5e-30 | Nonsense-mediated mRNA decay protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD2 PE=1 SV=2 |
| A0A1E4TCD8_9ASCO | 27.58% | 330 | 1e-26 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_139623 PE=4 SV=1 |
| A0A1D8PGW7_CANAL | 25.00% | 416 | 3e-23 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.864 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0383
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
1
200
400
600
800
1000
1182
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_02160_1 MSETEQNPEVPTDQQIASELAELDLSTAEYAEKRRELKELNERVWKGEKGVFPVSDNLDMTLKKNTSFIKKVRVSLKSTY LESILADIRTISLEKYLSEVISAVSEGLYKCKSESDFFTGGQVASALHQRFGVEFTGPLLRNMLNGAENIPKSILMSLSD ISRERELKTVLSRQKVAIRILVELWLIGVFRDVSDAIPYGIPAYAKPKASATIVDPPPLVAIKEVLSSDLITFTPVSIIF TVVKYYGNDILGNTVSPAESTATSTENSTHLVGATIQARFYRVFSAYAVSLQRRVQFLARELIRLQRLNEKRLLKFGTLK EEYKNAYKTQMAEATLLLANCKQLFEILNLKLSDIQLHYESALDNNEDPDGVIEGEIWLDESDRSFYENPISFLKNEDLK DDVSDLSDEEDEKEDEKLLQSLSNIKESSEKKSDGKELDTQDDEEFVYTIQGKLSSKLATTKSKYDNTLTIDEVLDNVIE EIQSKLLTNPSKEIADECAQLFFEKNGSKARVKLLDFLTSLKPFAQSKLRYICRFIADIHPIAPGILDGVLDYLSNYARY LRRKPRSNLYATRIFVTQYISELVKFGLVPKTFIFHIIHSSISPLNKTNAQMVCNLLEGCGKYLYYKNSTHKLMSKYLDM IDEKKSTTLLSFDERMLIVYAIHYIKPPPPVQAFPPKERPVIEQYVRKLIYLDLNKETKDQILEKLFRLNWKDPDTYRAL CKVFCKIWKVRLENIALMAEMLAQLKKCYYSFSVLVTDSVLEDIRRGLELGGYKNNQIRLSQAIYLGELAKQGIVGHQVI INTLYLMLTFGYPGNMPKPEGCKLDTPLELFRVRLTCTLLDTCGPFLNFVDSKLPSRGIKRELDLYMSFLQYYVRLKKGV SMDIEFQLRDTFKKVRPDFPIYETVEGAISGLEAAMKGQAPPKEKLRKYEVHMNNITLEEKEDSLVDYNDDDESKDTVDI GRDAVFKMPKVEKSEAEEAERQKYLAEKRRKKEERENAKAEDDLDAELQELMTGRKDLNPTMVRKPFDLPVPDSRKIFGS LKKNDENSAANGRESSEKNDHVKYALILKNSKTSGNNPSKATVIKTMDLPKSSTMVSSMIKQREEEEANKQRMNNLIMKY EYMSMEDDDDYDDTAPGQKGIVSSKHLLRPVIQRNLLKPTRYSKDKKNRSTTIDDIEDLATK
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003723 RNA binding
GO:0005488 binding
GO:0005515 protein binding
Cellular Component
None predicted.