Protein

MCA_02021_1

Length
914 amino acids

Gene name: FUN30

Description: ATP-dependent helicase, SNF2 family member

Browser: contigB:41445-44190-

RNA-seq: read pairs 1087, FPKM 14.7, percentile rank 33.6% (100% = highest expression)

Protein function

Annotation:FUN30ATP-dependent helicase, SNF2 family member
KEGG:K14439SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:3.6.4.12]
EGGNOG:0PG2XFG01275.1SNF2 family helicase ATPase
SGD closest match:S000000017FUN30ATP-dependent helicase FUN30
CGD closest match:CAL0000192125CAALFM_CR07600WADNA-dependent ATPase

Protein alignments

%idAln lengthE-value
MIA_05615_162.00%7500.0MIA_05615_1
A0A0J9XIX0_GEOCN61.84%7180.0Similar to Saccharomyces cerevisiae YAL019W FUN30 Conserved member of the Snf2p family with ATP-dependent chromatin remodeling activity OS=Geotrichum candidum GN=BN980_GECA22s01484g PE=4 SV=1
A0A060TB52_BLAAD54.70%8830.0ARAD1D25190p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D25190g PE=4 SV=1
A0A1E3PMS8_9ASCO60.86%7180.0Uncharacterized protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_12025 PE=4 SV=1
Q6C008_YARLI48.87%9270.0YALI0F28831p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F28831g PE=4 SV=1
UniRef50_Q6C00848.87%9270.0YALI0F28831p n=5 Tax=Saccharomycetales TaxID=4892 RepID=Q6C008_YARLI
A0A161HG36_9ASCO67.50%5230.0DNA-dependent ATPase FUN30 OS=Sugiyamaella lignohabitans GN=FUN30 PE=4 SV=1
A0A1D8PTJ0_CANAL52.67%7120.0DNA-dependent ATPase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR07600WA PE=4 SV=1
FUN30_YEAST57.27%5640.0ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUN30 PE=1 SV=1
A0A1E4TE73_9ASCO46.74%7210.0Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_16476 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.2457
Predicted cleavage: 19

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Domain
1 100 200 300 400 500 600 700 800 914

Detailed signature matches

  1. Domain IPR027417
    P-loop containing nucleoside triphosphate hydrolase
    1. SSF52540 (P-loop co...)
  2. Domain IPR014001
    Helicase superfamily 1/2, ATP-binding domain
    1. PS51192 (HELICASE_A...)
    2. SM00487 (ultradead3)
  3. Domain IPR000330
    SNF2-related, N-terminal domain
    1. PF00176 (SNF2_N)
  4. Domain IPR001650
    Helicase, C-terminal
    1. PS51194 (HELICASE_CTER)
    2. SM00490 (helicmild6)
    3. PF00271 (Helicase_C)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:3.40.50...
  2. G3DSA:3.40.50...
  3. cd00046 (DEXDc)
  4. cd00079 (HELICc)
  5. mobidb-lite (disord...)

Residue annotation

  1. ATP binding site c...
  2. putative Mg++ bind...
  3. nucleotide binding...
  4. ATP-binding site c...

Protein sequence

>MCA_02021_1
MSYNNSASSSPFFKKARLDPQAPGSRLQSLKERFSYGSLASPSVSPIPPYTSSLGSLDNREKVVAQQLQSIFPRIPSTMV
QYAVRKKGTFQNAADWLEDQNFLGSVSENKASPISKQNSLNRQQQAKPQKSILQKFGSASSKIRATDNRLSTPSSTASPA
PVKKRRLFKGSNSRSTALVLSDDDVSNDSNYSDESDEEGKFNDRVLNLINTASLEDIVDIASTTSELAQLMIKSRPFKSL
ENARKVDKSSGSGKPSRSRKTIGGKIIDECYKTLKGFEAVDSLIKRCEVLGKQVADDISKWGVSILGEKSEGLDLTSVNC
EDTPEKDSADDDNNDEDDEDDVRPNTRKRVRTELSNTVQTTTYFKEKPVLLAPEITLKTYQQVGINWLSLLYQRRLSCIL
ADEMGLGKTCQVVSFLAHLKEIGIEGPHLIVVPSSTLENWLREFQKFCPSFLVEPYYGTQNERAIIRDSILSSGSPKYDV
MVTTYNLACSSSADYTFLKHQKFNVCVYDEGHLLKNSQSERYAKLMRLKANFRLLLTGTPLQNNLRELISLLTFILPDIF
SSKKEDLAYIFKHKATTTTKNNQDFSNNPLLSEQRIIKAKTMMTPFVLRRKKEQVLSVLPPKTHKVEFCDMTKSQASIYE
KEFNISKSMINNMQSDKKKKIGNVLMNLRKAALHPLLFREIYNDSLLKTMSKEIMKEPCYYDAKQEYIFEDMQVMTDSEL
DRLCHDFKSISSYSLSEDEWLNSGKIIKLMDMLPKMKAQGDRILIFSQFTQVLDILEKVMNILNIQFLRMDGSTPVDSRQ
DMIDRFYEDEDITVFMLSTKAGGFGINLTCANVVIIHDLSFNPNDDKQAEDRAHRVGQTKPVNVIRLITRNTIEENILDL
ANIKLALDKSVNGEDDKATIDNNENLIAEKLLLK

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005524 ATP binding

Cellular Component

None predicted.