Protein
MCA_01926_1
Length
89 amino acids
Gene name: SME1
Description: Small nuclear ribonucleoprotein E
Browser: contigA:5884344-5884723-
RNA-seq: read pairs 731, FPKM 100.4, percentile rank 78.7% (100% = highest expression)
Protein function
| Annotation: | SME1 | Small nuclear ribonucleoprotein E | |
|---|---|---|---|
| KEGG: | K11097 | SNRPE | small nuclear ribonucleoprotein E |
| EGGNOG: | 0PS8Z | SME1 | Small nuclear ribonucleoprotein |
| SGD closest match: | S000005685 | SME1 | Small nuclear ribonucleoprotein E |
| CGD closest match: | CAL0000200122 | orf19.4205.1 | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9X688_GEOCN | 82.02% | 89 | 9e-50 | Similar to Saccharomyces cerevisiae YOR159C SME1 Core Sm protein SmE, part of heteroheptameric complex (With Smb1p, Smd1p, Smd2p, Smd3p, Smx3p, and Smx2p) that is part of the spliceosomal U1 OS=Geotrichum candidum GN=BN980_GECA03s06555g PE=4 SV=1 |
| MIA_02247_1 | 87.50% | 80 | 2e-48 | MIA_02247_1 |
| A0A060T3V3_BLAAD | 80.72% | 83 | 6e-46 | ARAD1C39842p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C39842g PE=4 SV=1 |
| UniRef50_A0A0E9N9R9 | 68.24% | 85 | 5e-37 | Uncharacterized protein n=2 Tax=Saitoella complicata NRRL Y-17804 TaxID=698492 RepID=A0A0E9N9R9_9ASCO |
| A0A1E3PS12_9ASCO | 67.06% | 85 | 3e-39 | Putative small nuclear ribonucleo protein E (SnRNP-E) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_48861 PE=4 SV=1 |
| A0A1D8PPC8_CANAL | 57.47% | 87 | 3e-31 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4205.1 PE=4 SV=1 |
| Q6CAN9_YARLI | 55.17% | 87 | 2e-29 | YALI0D01155p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D01155g PE=4 SV=1 |
| RUXE_YEAST | 50.56% | 89 | 6e-28 | Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.6914
Protein family membership
- Small nuclear ribonucleoprotein E (IPR027078)
Domains and repeats
-
Domain
1
10
20
30
40
50
60
70
80
89
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
heptamer interface...
-
Sm1 motif cd01718
-
RNA binding site c...
-
Sm2 motif cd01718
Protein sequence
>MCA_01926_1 MAPRQNRVMIPPINLLFKFLQTQTPVQVWLYEQVDSRLEGTIKGFDEFMNVVLDNTVEVNYKKNTRRDLGRILLKGDNIT LVSSLEADI
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
Molecular Function
None predicted.
Cellular Component
GO:0005681 spliceosomal complex