Protein
MCA_01720_1
Length
103 amino acids
Browser: contigA:5279712-5280203-
RNA-seq: read pairs 496, FPKM 58.9, percentile rank 68.9% (100% = highest expression)
Protein function
| KEGG: | K03872 | TCEB1 | transcription elongation factor B, polypeptide 1 |
|---|---|---|---|
| EGGNOG: | 0PQMI | FG00303.1 | transcriptional elongation regulator Elc1 Elongin C |
| SGD closest match: | S000005967 | ELC1 | Elongin-C |
| CGD closest match: | CAL0000177304 | ELC1 | Elongin C |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02051_1 | 85.71% | 98 | 2e-57 | MIA_02051_1 |
| A0A0J9XH57_GEOCN | 68.75% | 96 | 4e-41 | Similar to Saccharomyces cerevisiae YPL046C ELC1 Elongin C OS=Geotrichum candidum GN=BN980_GECA16s01319g PE=3 SV=1 |
| A0A167FJ45_9ASCO | 59.18% | 98 | 5e-33 | Elongin C OS=Sugiyamaella lignohabitans GN=ELC1 PE=3 SV=1 |
| A0A1E3PJP7_9ASCO | 55.21% | 96 | 2e-31 | Putative transcriptional elongation regulator Elc1/Elongin C OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_46839 PE=3 SV=1 |
| UniRef50_A7EAQ8 | 52.58% | 97 | 1e-27 | Uncharacterized protein n=17 Tax=sordariomyceta TaxID=715989 RepID=A7EAQ8_SCLS1 |
| A0A060T394_BLAAD | 48.96% | 96 | 1e-26 | ARAD1C30866p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C30866g PE=3 SV=1 |
| A0A1E4THZ7_9ASCO | 50.00% | 96 | 4e-22 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_24566 PE=3 SV=1 |
| Q6CHY2_YARLI | 43.62% | 94 | 3e-20 | YALI0A03575p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A03575g PE=3 SV=1 |
| Q59RB3_CANAL | 40.40% | 99 | 4e-17 | Elongin C OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ELC1 PE=3 SV=1 |
| ELOC_YEAST | 36.46% | 96 | 8e-14 | Elongin-C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELC1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0526
Protein family membership
- S-phase kinase-associated protein 1-like (IPR001232)
Domains and repeats
-
Domain
1
10
20
30
40
50
60
70
80
90
103
Detailed signature matches
no IPR
Unintegrated signatures
Protein sequence
>MCA_01720_1 MGKSKFVTLESSDGFIFVVEREAALVSGTLRGILESNSGFIEAESNHVKLPKINGVLLETVIDYFYFNLKYKDRTNVPQF EIKPENALYLLMIADYLDDNTFF
GO term prediction
Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process
Molecular Function
None predicted.
Cellular Component
None predicted.