Protein
MCA_01576_1
Length
1,278 amino acids
Gene name: MSH6
Description: DNA mismatch repair protein MSH6
Browser: contigA:4873696-4877664-
RNA-seq: read pairs 1509, FPKM 14.6, percentile rank 33.4% (100% = highest expression)
Protein function
| Annotation: | MSH6 | DNA mismatch repair protein MSH6 | |
|---|---|---|---|
| KEGG: | K08737 | MSH6 | DNA mismatch repair protein MSH6 |
| EGGNOG: | 0PH6E | MSH6 | DNA mismatch repair protein Msh6 |
| SGD closest match: | S000002504 | MSH6 | DNA mismatch repair protein MSH6 |
| CGD closest match: | CAL0000192796 | MSH6 | Mismatch repair ATPase |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02716_1 | 69.79% | 1142 | 0.0 | MIA_02716_1 |
| A0A0J9XA71_GEOCN | 63.38% | 1125 | 0.0 | Similar to Saccharomyces cerevisiae YDR097C MSH6 Protein required for mismatch repair in mitosis and meiosis OS=Geotrichum candidum GN=BN980_GECA06s04388g PE=3 SV=1 |
| A0A167DRY8_9ASCO | 65.71% | 980 | 0.0 | Mismatch repair ATPase MSH6 OS=Sugiyamaella lignohabitans GN=MSH6 PE=3 SV=1 |
| A0A060TI93_BLAAD | 63.85% | 957 | 0.0 | ARAD1D37092p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D37092g PE=3 SV=1 |
| Q6C0A2_YARLI | 61.02% | 980 | 0.0 | YALI0F26499p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F26499g PE=3 SV=1 |
| UniRef50_Q6C0A2 | 61.02% | 980 | 0.0 | YALI0F26499p n=6 Tax=Saccharomycetales TaxID=4892 RepID=Q6C0A2_YARLI |
| A0A1E3PJK0_9ASCO | 62.02% | 890 | 0.0 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_74035 PE=3 SV=1 |
| A0A1E4TJ93_9ASCO | 54.69% | 1066 | 0.0 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_75812 PE=3 SV=1 |
| A0A1D8PFM1_CANAL | 53.59% | 976 | 0.0 | Mismatch repair ATPase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MSH6 PE=3 SV=1 |
| MSH6_YEAST | 49.90% | 1006 | 0.0 | DNA mismatch repair protein MSH6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSH6 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.7181
Predicted cleavage: 42
Protein family membership
- DNA mismatch repair protein MutS/MSH (IPR017261)
Domains and repeats
-
Domain
-
Domain
1
200
400
600
800
1000
1278
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_01576_1 MTEPSSQSVLSPQTPSSSKKQKKNQSSLLSFFGSGSPKPRSGSSVLKSGNKTAAASGKPAISSPTKKSNLSSLTKPALAS STPSAGEEEDDDDQATLKPKNEVRTTKANHIKNEKGDEDAIESLPTPKSPSEATENQEDEEDLQPSSTSPKSRPKKKISY VESSDEEDETPKIRGNAKRRKIALEDSEDEYMPDADTTVVNDEDDDDMDDFVVPDDLSDDEPAPKPKRKSKSPQVAATPA RSKSSSFNNKALEKFSSSSPYKTTPSLTPKASRPTPKKETPAKQSFEKMNEERYQWLVDIRDADGNRPDSPDYDNRTLYI PKSAWNKFTPFEKQYWEVKSKMWNTVVFFKKGKFYELYENDADIAHSTFDLKLAGGGRANMRLCGVPEMSFDYWASAFIA KGYKVARVDQVETALAKEMRETSNAKKEDKVIRRELSCVLTGGTLVDEGMLVDDMSTYCMAIKQNETNFAVCFVDTATGA FYITEFEDDVDYSQFETLVAQTRPRELILEKGVISMRAVRILKNNTSPSTLWNYLKPEIEFWDSDTAFENLVRAKYFEAE DLDDLSKYPPVLKEICQSPKHKLSMSAFGALNWYLKSLKIDTSIISLGNFNSYEAINISKHQQTMILDGQSLQNLEIFAN TFDGSSKGTLFQLLNRCITPFGKRQLQIWICHPLMNAAQINARLDAVEIFINNGEIRDFLERKLATLPDLERLLSRVHAG RLPPKDFARVIEGFQCIDSLKAGMAGQFGDEIAGSGDPNKKSLIGEIISQMPPIETLLPEWTSAVDWAEAKKNNKLVPEP GVEPDFDQSLVNIKEIEGRLNEKLREYRREFKSQEICYRDSGKEIYLIEVPNKVKNIPKNWQQMAATSKVKRYWSPEVKA LARELMEALETHKGIGEQVQARLYHRFDQNYKQWLATVKSVSTLDCLLSLSKTSMALGAPSVRPEILEPEEKEGVSNKGV ITFEELRHPCFDNSETNFIPNDIQLGGEEANLVLLTGANAAGKSTVLRMTCVAVIMAQMGTYVPAAKARLTPIDRIMTRL GANDNIFAGKSTFYVELSETKRMLTEATPRTLLVLDELGRGGSSSDGFAIAEAVLHHLASHVGSLGFFATHYNTLWSSFR GHPEVAPKQMAIMVDESSRNVTFLYKLVDGVSPGSFGMHVASMCGIDSSIVDRAESAASEYEHTSRMKRLLNVTSATHGG SGLDSEDSLKVVPLGAQSDLKWAMKEMMALSTGTDSSSIVDHGCDNEDLKLAKLGHLEDESRKEHALRCLLAIAKTLK
GO term prediction
Biological Process
GO:0006298 mismatch repair
Molecular Function
GO:0005524 ATP binding
GO:0030983 mismatched DNA binding
Cellular Component
None predicted.