MCA_01320_1

Protein

Length

160 amino acids

Gene name: MRPL23

Description: 54S ribosomal protein L23, mitochondrial

Browser: contigA:4148909-4149548+

RNA-seq: read pairs 4014, FPKM 308.1, percentile rank 92.0% (100% = highest expression)

Protein function

Annotation:		MRPL23	54S ribosomal protein L23, mitochondrial
KEGG:	K02871	RP-L13	large subunit ribosomal protein L13
EGGNOG:	0PN44	MRPL23	mitochondrial 54S ribosomal protein YmL23
SGD closest match:	S000005676	MRPL23	54S ribosomal protein L23, mitochondrial
CGD closest match:	CAL0000194298	orf19.3348	Mitochondrial 54S ribosomal protein YmL23

Protein alignments

	%id	Aln length	E-value
A0A0J9XIX9_GEOCN	80.50%	159	4e-99	Similar to Saccharomyces cerevisiae YOR150W MRPL23 Mitochondrial ribosomal protein of the large subunit OS=Geotrichum candidum GN=BN980_GECA17s02309g PE=3 SV=1
MIA_04679_1	83.23%	155	6e-99	MIA_04679_1
A0A1E3PP88_9ASCO	64.05%	153	1e-72	Ribosomal protein L13 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_50577 PE=3 SV=1
A0A060T821_BLAAD	62.09%	153	4e-70	ARAD1D00308p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D00308g PE=3 SV=1
UniRef50_A0A1X7QZJ4	59.12%	159	3e-62	Similar to Saccharomyces cerevisiae YOR150W MRPL23 Mitochondrial ribosomal protein of the large subunit n=2 Tax=Fungi TaxID=4751 RepID=A0A1X7QZJ4_9SACH
RM23_YEAST	57.42%	155	5e-62	54S ribosomal protein L23, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL23 PE=1 SV=1
A0A167CR85_9ASCO	66.67%	132	1e-60	Mitochondrial 54S ribosomal protein YmL23 OS=Sugiyamaella lignohabitans GN=MRPL23 PE=3 SV=1
A0A1E4TA12_9ASCO	56.55%	145	1e-58	Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_27295 PE=3 SV=1
Q5A8Y6_CANAL	51.88%	160	3e-57	Mitochondrial 54S ribosomal protein YmL23 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3348 PE=3 SV=1
Q6C9L9_YARLI	50.66%	152	9e-53	YALI0D10065p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D10065g PE=3 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.6181

Protein family membership

Ribosomal protein L13 (IPR005822)
- Ribosomal protein L13, bacterial-type (IPR005823)

Domains and repeats

None predicted.

Detailed signature matches

IPR005822

Ribosomal protein L13
1. MF_01366 (Ribosomal...)
  
  16 - 142
  
  HAMAP
  MF_01366 (Ribosomal_L13)
2. SSF52161 (Ribosomal...)
  
  12 - 138
  
  SUPERFAMILY
  SSF52161 (Ribosomal protein L13)
3. cd00392 (Ribosomal_L13)
  
  16 - 132
  
  CDD
  cd00392 (Ribosomal_L13)
4. PF00572 (Ribosomal_L13)
  
  16 - 138
  
  Pfam
  PF00572 (Ribosomal_L13)
5. PIRSF002181 (RPL13p...)
  
  1 - 159
  
  PIRSF
  PIRSF002181 (RPL13p_RPL13Aa_RPL16e_RPL13o)
6. G3DSA:3.90.11...
  
  1 - 160
  
  GENE3D
  G3DSA:3.90.1180.10 (G3DSA:3.90.1180.10)
IPR005823

Ribosomal protein L13, bacterial-type
1. TIGR01066
  
  10 - 137
  
  TIGRFAMs
  TIGR01066 (TIGR01066)

Residue annotation

23S rRNA interface...

27T

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

29G

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

30R

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

33T

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

36A

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

40M

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

68T

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

70N

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

99K

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

100G

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

106R

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

107Q

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

108A

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

110S

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

111K

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

112M

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

114P

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

115K

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

116N

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

118L

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

120K

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

124D

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

127K

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)

128T

23S rRNA interface
27T, 29G, 30R, 33T, 36A, 40M, 68T, 70N, 99K, 100G, 106R, 107Q, 108A, 110S, 111K, 112M, 114P, 115K, 116N, 118L, 120K, 124D, 127K, 128T
CDD
cd00392 (Ribosomal_L13)
L3 interface cd00392

100G

L3 interface
100G
CDD
cd00392 (Ribosomal_L13)

Protein sequence

>MCA_01320_1
MSQFVGRTALSHARIWHHIDMAKETRTLGRVATAIALTLMGKHKPTYNQAVDGGDYVVVSNCHYLNVTGNKMEQKMYRRH
SNRPGNLHEVKMADVLANKGGGEILRQAVSKMLPKNRLRKFRLDRLKTFEDSTNPYADNIIAYHDEAPQVAELLKAVKKS

GO term prediction

Biological Process

GO:0006412 translation

Molecular Function

GO:0003735 structural constituent of ribosome

Cellular Component

GO:0005840 ribosome

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Entry type

Status

Per-residue features