Protein

MCA_01276_1

Length
1,450 amino acids

Description: pentatricopeptide repeat protein; probably localized in mitochondria

Browser: contigA:4015457-4019810-

RNA-seq: read pairs 262, FPKM 2.2, percentile rank 12.2% (100% = highest expression)

Protein function

Annotation:pentatricopeptide repeat protein; probably localized in mitochondria
EGGNOG:0PH31pentatricopeptide repeat protein

Protein alignments

%idAln lengthE-value
MIA_06160_144.77%10320.0MIA_06160_1
A0A0J9X4K7_GEOCN35.61%11120.0Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA02s05928g PE=4 SV=1
UniRef50_A0A0J9X4K735.61%11120.0Uncharacterized protein n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X4K7_GEOCN
A0A161HMC1_9ASCO36.84%11210.0Uncharacterized protein OS=Sugiyamaella lignohabitans GN=AWJ20_2418 PE=4 SV=1
A0A060TA03_BLAAD34.18%11060.0ARAD1D15708p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D15708g PE=4 SV=1
A0A1E3PSL4_9ASCO33.95%11310.0Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81286 PE=4 SV=1
Q6C051_YARLI39.30%5751e-112YALI0F27753p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F27753g PE=4 SV=1
A0A1E4TC61_9ASCO25.17%4494e-34Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_138606 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.9879
Predicted cleavage: 47

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Repeat
1 200 400 600 800 1000 1200 1450

Detailed signature matches

  1. Domain IPR011990
    Tetratricopeptide-like helical domain
    1. G3DSA:1.25.40.10
  2. Domain IPR033443
    Pentacotripeptide-repeat region of PRORP
    1. PF17177 (PPR_long)
  3. Repeat IPR002885
    Pentatricopeptide repeat
    1. PS51375 (PPR)
    2. TIGR00756
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:3.30.23...
  3. NON_CYTOPLASM... (N...)
  4. SIGNAL_PEPTIDE (Sig...)
  5. SIGNAL_PEPTID... (S...)
  6. SIGNAL_PEPTID... (S...)
  7. SIGNAL_PEPTID... (S...)
  8. mobidb-lite (disord...)

Protein sequence

>MCA_01276_1
MLFKSFSRHSSLAKTIFAASNASGQPAFFMTTSQLKRQQSQLVPRQNSSFGSSRNSNNSTNPKAYACLCNSSSYSTLSPL
SSLDDDKRREAILNESIGSSGSCLIYNQQHSLAPSNEVLESNYSTINNIRSFSRPRRCSTSVLDEDFTPLVEYSGQEQLQ
RRRYSTSAARFGSRNNTTSNSPTNENSQPQQPQNDSDKSKPSSTSAAQPSQTNNTFYEPSYENGNDPIYESTSTTATKNS
NSELNPLTPLNSTSSIASDQFTPNSSSFSEKLSPTISSESSPLLPSLYKNLSNALSSGSFQSVVSSYDLFVKNEIPLDLD
STQAVLQVISQNLTQKSVDPVTAAVSTLEIYSHLISRQVTPSLEIYSTVISTLIESSKFINSTVESSFLFKGITSRVHPK
LPLLQSIKSELQNCQSSPFVKIALDIYNASTTYHSKKYSPAVYSKLIDACVTYHHEKYLSSIISSYEEHQYTLSPQDYAN
LILGYGQYKDASAVIECYNFYKRKAPIFSDKKEMLVYSALVTAFFKLNSPSSALRFLDLLLDSTSSNTSPQSPHLSSIPL
YAPKISQTQNDKRLASLAPVVNSIIAGFASIGDYNRCWEWILKVNSNAEFPPIDLSTLITSLTCLCKADQVSLADKLFDL
MASRKDSKDSLEFNVARADYLAMCIRTKSFNLFMKAIKESRLRNGIWDTMTIISATRYLIALGEAELATKVFNQQTERYT
KYINSNSELCHLISSSNDTVQTDAFSSVTDYMEKYKLLNVANGLNLSKSSFFSKRSFFREKGGQKILQKVWDDVALNNSK
ELNAIRETSPYIDSYIVSLHLVWIKACAGENNSLGEISLPYPLLDYLKENFAYFVNSLIQRQAKFPLSINSEFISDISEA
LTLLNDSETKWKWQKFTESLSSPTPIPVDISKAAADLGTTSTSNENSLHPNPSVSQLPWRTDITSQITLLAQNPSTLYKA
FDQLEQAVALNQMVGPEAYLAIIDSASSKKALTIIQSAYRLALQSLPHPSEHPDAWVAWNMIHRSVIQRANLDYTLAQAA
YQHLAEMGSFPCANGYAQLINNAPSSNSHDEASDAIRLFSEARQNGVILNTFIYNVLLSKLSKARHLKEALELFNDMDAT
QTKKTNITYGTMISACCRSGEEATALKLFEEMESSPQYTPKIAPFNTLLQYYVHTKQDREKALAVYNKIKTIGLNPSEHT
YKLLIECYSAIAPIDIEQADNVLLTIVNDKNQVTTKHYATLIFGRGVSLKNLRAAQDFYNALVNQNRVRPDKHIFQALLE
SYTVNENQVHGTTDVLKEMVKYGVDLDACMANTLIRGWAKVNLAKAQGLFDYIMFNAQIAEPSSFESIIRAYLYHGQTDK
VFELVQLLKAQYYPEPVVSKIEQLVSRYVSNDGMAIVVDVAERERILLESIFRHDSHALLQSFNGSTSSSQMEIPIPHTS
FVQQDNNIQA

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005515 protein binding

Cellular Component

None predicted.