Protein

MCA_01217_1

Length
978 amino acids

Description: Homeobox protein

Browser: contigA:3843511-3846448+

RNA-seq: read pairs 1115, FPKM 14.1, percentile rank 32.5% (100% = highest expression)

Protein function

Annotation:Homeobox protein
SGD closest match:S000002859YHP1Homeobox protein YHP1

Protein alignments

%idAln lengthE-value
MIA_00346_145.63%1031e-18MIA_00346_1
YHP1_YEAST46.67%454e-06Homeobox protein YHP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHP1 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1969

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 700 800 900 978

Detailed signature matches

  1. Domain IPR009057
    Homeobox domain-like
    1. SSF46689 (Homeodoma...)
  2. Domain IPR001356
    Homeobox domain
    1. SM00389 (HOX_1)
    2. PS50071 (HOMEOBOX_2)
    3. cd00086 (homeodomain)
    4. PF00046 (Homeobox)
  3. SITE IPR017970
    Homeobox, conserved site
    1. PS00027 (HOMEOBOX_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:1.10.10.60
  3. mobidb-lite (disord...)

Residue annotation

  1. DNA binding site c...
  2. specific DNA base ...

Protein sequence

>MCA_01217_1
MGRSFINKRKKDNDSEVSSEEENDDVAEKIPVIPFLCNEDLFIKELSDRLHESSLYNAILNGEDTGSTFSFNCATEVPVE
APITYSVLTKGPPQFRQPDLQKLNQSHGNSNKRVNKPPKNSSHSQDDLDKSGSQLILQEIRKLLSTSKQTVSSDIPANMK
NDISITPTTPISSTDKKVVLQAPLLNASDKTKTMNELPLDSPQTPPTQIVDLNYASRREAALGSVRNDGDSRNNDSQTQA
LMLETFQPVTHSTPVNSVQSSGHRHPNMLGQFELYTPSEPSPFQSSPLSHKSTTPIDYNLSTSSPTPKSQIGSLSFIMNS
SSSSIPENSNTLSVASESDQLTEGGAVYDTFNNNDLVTEKAEEAVKSPIIESRKNISIKDLIDHFSNSSQDSSFSANSES
SDHSASNSNITFGTTDNLLNFRANANSSILNQPTANPYLFKTTLADVGKSNAVLSKALTPDIGLSTSNNEFLKPFQTAEP
TSISTELMDLDVDVDHSSPLQPESINIANNTKHVTFNNEIELINSPVSQSSIMSDEEDEYKNPFASYFEASANAKRHSSS
PDNYESSDRSFENDDDNKNKTEISNSDLELFGDYSDDLETDSDNDDDDDDDDMFPNYSRSHEERLSELRAVAPSKEKFEE
AKKYFESLYQTEETLTQKSPVQYSSSTTTPSSSKVGKTSLSTDNLKAKSGNIYPSKESMEKGKKRNLNSVSDFSEEPVRD
KEKKNWISIDDIINSDPIEDDITNNDPIENIAKLLAEIEQKSHSTEEAAHFGFNYSDQCPSGSPSNINIDSNKHFSTEEW
KSFIGSNDGGSNQETSYKSIFDGYNIMMNGTGFYEDNENNNNEPNDEQYSMPLQPPEYYKQMIQKELENYLEDVKAILGN
DASIPKSAYINRDLEYARIFERKLREYREPLELSENERRTLLQNVFDKMPKLNKVQVKYLSEMTGLTEKSVRIWFSNRRS
RSKKQPAGSKNNRKKRKV

GO term prediction

Biological Process

GO:0006355 regulation of transcription, DNA-templated

Molecular Function

GO:0003677 DNA binding
GO:0043565 sequence-specific DNA binding

Cellular Component

None predicted.