Protein
MCA_01164_1
Length
131 amino acids
Gene name: RPC19
Description: DNA-directed RNA polymerases I and III subunit RPAC2
Browser: contigA:3683713-3684277-
RNA-seq: read pairs 649, FPKM 60.8, percentile rank 69.5% (100% = highest expression)
Protein function
| Annotation: | RPC19 | DNA-directed RNA polymerases I and III subunit RPAC2 | |
|---|---|---|---|
| KEGG: | K03020 | RPC19 | DNA-directed RNA polymerases I and III subunit RPAC2 |
| EGGNOG: | 0PQX3 | RPC19 | DNA-directed RNA polymerase I and III |
| SGD closest match: | S000005057 | RPC19 | DNA-directed RNA polymerases I and III subunit RPAC2 |
| CGD closest match: | CAL0000179133 | RPC19 | DNA-directed RNA polymerase core subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02995_1 | 71.88% | 128 | 9e-63 | MIA_02995_1 |
| A0A0J9X7H8_GEOCN | 78.64% | 103 | 2e-59 | Similar to Saccharomyces cerevisiae YNL113W RPC19 RNA polymerase subunit AC19 OS=Geotrichum candidum GN=BN980_GECA04s05356g PE=4 SV=1 |
| A0A060T7I3_BLAAD | 68.91% | 119 | 1e-56 | ARAD1C28380p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C28380g PE=4 SV=1 |
| A0A1E3PQ28_9ASCO | 63.48% | 115 | 2e-51 | RNA polymerase I and III subunit OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_21329 PE=4 SV=1 |
| UniRef50_A5DL81 | 62.96% | 108 | 2e-45 | Uncharacterized protein n=4 Tax=Ascomycota TaxID=4890 RepID=A5DL81_PICGU |
| A0A1E4TM14_9ASCO | 64.49% | 107 | 1e-48 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_43380 PE=4 SV=1 |
| Q6C4D6_YARLI | 57.26% | 124 | 3e-48 | YALI0E27676p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E27676g PE=4 SV=1 |
| Q59LT9_CANAL | 66.67% | 105 | 2e-47 | DNA-directed RNA polymerase core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPC19 PE=4 SV=1 |
| RPAC2_YEAST | 70.41% | 98 | 1e-45 | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC19 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0374
Protein family membership
Domains and repeats
-
Domain
1
20
40
60
80
100
120
131
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
AC19 - AC40 hetero...
-
AC19 - A135(C128) ...
-
AC19 - A190(C160) ...
-
AC19 - RPB8 intera...
Protein sequence
>MCA_01164_1 MSDPQSKMASDEPMPDVQEEYYQEIDPEKITILPGASEDRTAVSFQLKNEDHTLGNALRWIIMKNPDVEFCGYSIPHPSE AKLNIRIQTYGDITAVEALKKGLRDLVDLCNHTESHFRERVKEGNYGNEEL
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0046983 protein dimerization activity
Cellular Component
None predicted.