Protein

MCA_01148_1

Length
291 amino acids

Gene name: IMP4

Description: U3 small nucleolar ribonucleoprotein protein IMP4

Browser: contigA:3645698-3646574-

RNA-seq: read pairs 1058, FPKM 44.8, percentile rank 62.9% (100% = highest expression)

Protein function

Annotation:IMP4U3 small nucleolar ribonucleoprotein protein IMP4
KEGG:K14561IMP4 U3 small nucleolar ribonucleoprotein protein IMP4
EGGNOG:0PII8IMP4U3 small nucleolar ribonucleoprotein protein imp4
SGD closest match:S000005019IMP4U3 small nucleolar ribonucleoprotein protein IMP4
CGD closest match:CAL0000181923IMP4SnoRNA-binding rRNA-processing protein

Protein alignments

%idAln lengthE-value
A0A0J9X428_GEOCN83.16%2914e-168Similar to Saccharomyces cerevisiae YNL075W IMP4 Component of the SSU processome OS=Geotrichum candidum GN=BN980_GECA02s06489g PE=4 SV=1
A0A161HHL1_9ASCO78.35%2917e-161Imp4p OS=Sugiyamaella lignohabitans GN=IMP4 PE=4 SV=1
A0A060TAQ4_BLAAD76.98%2912e-158ARAD1D21604p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D21604g PE=4 SV=1
IMP4_YARLI76.63%2912e-157U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1
A0A1E3PNV0_9ASCO76.98%2912e-157U3 small nucleolar ribonucleo protein IMP4 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49552 PE=4 SV=1
MIA_02149_173.05%3083e-150MIA_02149_1
IMP4_YEAST71.48%2913e-150U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1 SV=1
UniRef50_P5394171.48%2916e-147U3 small nucleolar ribonucleoprotein protein IMP4 n=447 Tax=Fungi TaxID=4751 RepID=IMP4_YEAST
A0A1E4TKM5_9ASCO72.16%2919e-149Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_84555 PE=4 SV=1
Q59X74_CANAL66.32%2912e-131SnoRNA-binding rRNA-processing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IMP4 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.4972

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 50 100 150 200 250 291

Detailed signature matches

  1. Domain IPR004154
    Anticodon-binding
    1. SSF52954 (Class II ...)
  2. Domain IPR007109
    Brix domain
    1. SM00879 (Brix_2)
    2. PS50833 (BRIX)
    3. PF04427 (Brix)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:3.40.50...

Protein sequence

>MCA_01148_1
MIRRQARERREFLYKKSLQLQEAQLALKRQQLKKALASGKPLPKELQDDENLRRTFKYDESITADTKDGLSEEIDDEYSA
LSGITDPQVVVTTSRDPSARLNQFAKEIKLLFPTGVRLNRGNTILPNLVSACQSSSATDLVILHEHRGVPTAMTISHFPY
GPTASFSLHNVVLRHDLVNTGTQSEAHPHLIFDNFTSPLGKRVSTILKHLFPPGVKKDSSRVITFANRGDYISVRQHVYV
RTREGVEIAEVGPRFEMKLYELKLGTVENKDADMEWKLRGFVRTANRKDYL

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.