Protein

MCA_01108_1

Length
344 amino acids

Gene name: RPC34

Description: DNA-directed RNA polymerase III subunit RPC6

Browser: contigA:3520109-3521213-

RNA-seq: read pairs 754, FPKM 27.0, percentile rank 49.7% (100% = highest expression)

Protein function

Annotation:RPC34DNA-directed RNA polymerase III subunit RPC6
KEGG:K03025RPC6 DNA-directed RNA polymerase III subunit RPC6
EGGNOG:0PFKURPC34DNA-directed RNA polymerase III subunit
SGD closest match:S000005286RPC34DNA-directed RNA polymerase III subunit RPC6
CGD closest match:CAL0000189174orf19.5608DNA-directed RNA polymerase III subunit

Protein alignments

%idAln lengthE-value
MIA_00881_170.15%3357e-177MIA_00881_1
A0A0J9X835_GEOCN64.06%2814e-140Similar to Saccharomyces cerevisiae YNR003C RPC34 RNA polymerase III subunit C34 OS=Geotrichum candidum GN=BN980_GECA05s00945g PE=4 SV=1
UniRef50_A0A0J9X83564.06%2817e-137Similar to Saccharomyces cerevisiae YNR003C RPC34 RNA polymerase III subunit C34 n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X835_GEOCN
A0A161HFL4_9ASCO60.07%2684e-124Rpc34p OS=Sugiyamaella lignohabitans GN=RPC34 PE=4 SV=1
A0A060T841_BLAAD44.89%3237e-102ARAD1D04004p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D04004g PE=4 SV=1
A0A1E3PSX4_9ASCO52.26%2663e-97RNA polymerase Rpc34 (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_14592 PE=4 SV=1
A0A1E4TLL5_9ASCO47.92%2656e-89Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_90529 PE=4 SV=1
A0A1D8PQ44_CANAL41.49%3357e-83DNA-directed RNA polymerase III subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.5608 PE=4 SV=1
RPC6_YEAST41.52%3302e-82DNA-directed RNA polymerase III subunit RPC6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC34 PE=1 SV=1
Q6C2B2_YARLI41.94%3108e-75YALI0F09295p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F09295g PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1067

Protein family membership

Domains and repeats

  1. Domain
1 50 100 150 200 250 300 344

Detailed signature matches

  1. Family IPR007832
    RNA polymerase Rpc34
    1. PF05158 (RNA_pol_Rpc34)
    2. PIRSF028763 (RNAP3_...)
  2. Domain IPR011991
    Winged helix-turn-helix DNA-binding domain
    1. G3DSA:1.10.10.10
    2. SSF46785 ("Winged h...)

Protein sequence

>MCA_01108_1
MSDSALNLSSKASELYHAMISSQPMGYLFKQTELQELIKAKDLNVLMKFAQELMNNQMVKLSQDGNDLLFSAVSIEEANK
MKGMTQDEAIVYSFIEEAGRDGIWSRTLNARTNLHANVVTRCIKSLESQRFIKQVKSVKHPARKIYILASMEPSVEMSGG
PWFTDAEIDTEFIDSLLHVIWRYVVSLTFPSAFTSVPPVNGQKVLQQSYPATYRGYPPVAKIHQFIVKSGVTSVELTLVD
VRTLCEVLVYDGKLERVDGGFSYKATWQSVVAAEGGPEALYEDENQIDSLDAFTETPCGHCPVFEYCSENGLVNASDCVY
YDDYLEFGDQQKKASSEPALDASA

GO term prediction

Biological Process

GO:0006383 transcription from RNA polymerase III promoter

Molecular Function

None predicted.

Cellular Component

GO:0005666 DNA-directed RNA polymerase III complex