Protein
MCA_01106_1
Length
364 amino acids
Browser: contigA:3516318-3517475-
RNA-seq: read pairs 942, FPKM 31.9, percentile rank 54.4% (100% = highest expression)
Protein function
| EGGNOG: | 0PRWQ | FG10137.1 | Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region (By similarity) |
|---|---|---|---|
| SGD closest match: | S000004289 | YHC1 | U1 small nuclear ribonucleoprotein C |
| CGD closest match: | CAL0000200741 | YHC1 | U1 small nuclear ribonucleoprotein C |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_00585_1 | 61.11% | 90 | 1e-30 | MIA_00585_1 |
| A0A1E3PSL3_9ASCO | 52.13% | 94 | 3e-23 | Zf-U1-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81266 PE=3 SV=1 |
| UniRef50_A0A1E3PSL3 | 52.13% | 94 | 7e-20 | Zf-U1-domain-containing protein n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PSL3_9ASCO |
| A0A060T5T3_BLAAD | 47.37% | 95 | 3e-23 | ARAD1B06292p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B06292g PE=3 SV=1 |
| RU1C_CANAL | 64.58% | 48 | 3e-15 | U1 small nuclear ribonucleoprotein C OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YHC1 PE=3 SV=1 |
| RU1C_YEAST | 59.52% | 42 | 5e-12 | U1 small nuclear ribonucleoprotein C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHC1 PE=1 SV=1 |
| A0A1E4TCI3_9ASCO | 37.97% | 79 | 6e-10 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_4045 PE=3 SV=1 |
| A0A0J9XHX3_GEOCN | 68.75% | 32 | 1e-08 | Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA15s02848g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0707
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
364
Detailed signature matches
no IPR
Unintegrated signatures
-
mobidb-lite (disord...)
Protein sequence
>MCA_01106_1 MPKYYCDYCGSSLTHDSMSVRKSHSVGKHHIKLVIDYYETVAIEDGLLPESLLTAYVQPNGVRMVNPHLESILNPRNPLD QTEQLSEFVKGAPANITAIPEISAQVYAGETGQEILNSHQAQIANQPKALPAITETEEPDASFIPNNTNNSNIPIPFQPS STSSEKGDFGYGKHNSSYSSNNQSNPDVLANQFLESIAIQAAPLNDNSQNNRFSGTPNNRNSGGYGYNSNNQHGNRDYRD NRENIPTNYNSGHRSPGNSNPSYGNRGDRFDNNNNYKRRYPNNGPGYGNQSDKGYSNNNNNNYHSRGFGGGNQGNRNYGN NDRDRERDRNAPYSRNYRQDYHNNNSGGGHYQQRYNRGSRDRDE
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding
Cellular Component
GO:0005634 nucleus