MCA_01105_1

Browser: contigA:3514643-3515693+

RNA-seq: read pairs 11, FPKM 0.4, percentile rank 6.2% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0151

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   349 - 349

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   23 - 326

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. SIGNAL_PEPTIDE (Sig...)
   1 - 22

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
4. SIGNAL_PEPTID... (S...)
   18 - 22

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
5. SIGNAL_PEPTID... (S...)
   6 - 17

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
6. SIGNAL_PEPTID... (S...)
   1 - 5

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
7. SignalP-noTM
   1 - 22

   SignalP euk
   SignalP-noTM (SignalP-noTM)
8. TMhelix
   326 - 348

   TMHMM
   TMhelix (TMhelix)
9. TRANSMEMBRANE (Tran...)
   327 - 348

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
10. mobidb-lite (disord...)
    251 - 284

    MobiDB Lite
    mobidb-lite (disorder_prediction)

Protein sequence

>MCA_01105_1
MRLSDFPVALTILSSITSFLEAAAGPKLDISVNDSKYNEHIQDSIDLNSDQTLLESSVHVDNSNKQDNNYYNIKFSLFLL
NSLLGLQKRNSDHVDNATQGKSTSSMKNVIVYRPPLTDTPQTPTNIAADPKFPLIPLVESYSSLEAHTDLPDDYTETPPI
EPLIEPLLPPIDSETTIVQATLVSYSTNNIDSSRQTLNSITSPAAIQTLEAVTGVNSGINTTPSTMRTYYSVYTTPSSSY
NKNSIIATNSLSPSAETSAPSSTKTSSQLETPTSSSKKTNSYTKFFTKTPTPATPLQLDPDPFIRTTRFGPTNDLHLFES
YRLPNNASVLMVHCTIYLMLALFSIIVWT

GO term prediction