Protein

MCA_01037_1

Length
314 amino acids

Description: protein with retrotransposon Gag domain and Zn finger domain

Browser: contigA:3294604-3295549-

RNA-seq: read pairs 261, FPKM 10.2, percentile rank 26.3% (100% = highest expression)

Protein function

Annotation:protein with retrotransposon Gag domain and Zn finger domain

Protein alignments

%idAln lengthE-value
UniRef50_A0A1S3TSL531.10%1641e-06uncharacterized protein LOC106758342 n=2 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3TSL5_VIGRR

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0858

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 314

Detailed signature matches

  1. Domain IPR005162
    Retrotransposon gag domain
    1. PF03732 (Retrotrans...)
  2. Domain IPR001878
    Zinc finger, CCHC-type
    1. SM00343 (c2hcfinal6)
    2. G3DSA:4.10.60.10
    3. SSF57756 (Retroviru...)
    4. PS50158 (ZF_CCHC)
Unintegrated signatures no IPR
Unintegrated signatures
  1. mobidb-lite (disord...)

Protein sequence

>MCA_01037_1
MSSSIKNENPTTHTTEQYNSIIIECEKVPRIAKITAYKGQSDPSIINEWISKIESAMRTRFVDSRYWASAAFDLALFDGP
AEKWAKDGLNVVRANNGPIAPLIEWKTFCDAMRVFFVPEAVERALEAKVYRMQKSDTGSVIQYVADLRNCLYLLKPEVRR
KINVKQIFFHGLDSEMRDKLEVFYDNLSSDDLMQRALRMCHEEGRWKFRHFFDPNQTEMTLVDPLAIKAVQASPEPTVGV
DNINYNRNNSKNRNNKGSDNGKKNNNQRNAAGFPANIVCYTCRGKGHTSRVCPNKKKNASSNSSSSPKNSENQH

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding

Cellular Component

None predicted.