MCA_01002_1

Browser: contigA:3175164-3187005-

RNA-seq: read pairs 365, FPKM 1.1, percentile rank 9.6% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0025
Predicted cleavage: 61

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   3,946 - 3,946

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   20 - 3,925

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. SIGNAL_PEPTIDE (Sig...)
   1 - 19

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
4. SIGNAL_PEPTID... (S...)
   15 - 19

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
5. SIGNAL_PEPTID... (S...)
   6 - 14

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
6. SIGNAL_PEPTID... (S...)
   1 - 5

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
7. SignalP-noTM
   1 - 19

   SignalP euk
   SignalP-noTM (SignalP-noTM)
8. TMhelix
   3,926 - 3,945

   TMHMM
   TMhelix (TMhelix)
9. TRANSMEMBRANE (Tran...)
   3,926 - 3,945

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
10. mobidb-lite (disord...)
    2,383 - 2,420

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    3,887 - 3,919

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    3,822 - 3,841

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    2,144 - 2,185

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    3,652 - 3,750

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    1,701 - 1,737

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    1,469 - 1,508

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    1,920 - 1,955

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    2,613 - 3,620

    MobiDB Lite
    mobidb-lite (disorder_prediction)

Protein sequence

>MCA_01002_1
MKIHQFLAFGLLLATHSLAGIIIDPQLNNLQPSSSSSNVPETSQSSQSINYNLNHLLKRQQTPGKDQACVPTNVNTERGC
LNFCGNVYHYFESQHPELMSFCDADNPSISENEKAIQACFSCSNNYPNEFGTKLWEKTQGCREEAPPVLPECNELCLDRN
IAISEERCSQFCHNVGINLPGDPVAPPKKHKRQGGSLYPEEDFFCTAVMNNWADIKLCLFCSERFPKEVGYEHSMRNYIN
NCPLFEIALPREKVTLCMDDKEPFDFPSIPPYSIPCLPSALQSEPGCSNLCQVLADAIGDYKDYFGVDGALCPEEQAYMP
PKAKRGLDDSSSSSSSSDLDKRQYYLPDEVYHGTHPYDYAKNLTLVIRTCLSCSETSPNPGANKLKQLIENCPSSFSEPL
PPACPCPEPPTTNECTECVSVTSFYSQFSYYEEAGDTLGICMTLYANYETLYKCSLCDSGSSLPFLKKRQSESSTDMVKR
WFSLCPYFADDTCSVSSSSSSATTTVTSSMTEPTLPNIPTGAVPCFPPVLEDPDQCANICNSIANAIEDYTNFYYQHSSI
VCPSTGAIFRREVAAAPENIPVVPFRVKRQSGPLPTDEPETPYEYALSLEGQVRQCFACAENAPNSGSEKLGGLLVQCPT
DFKTPPVPVCNNECLQPGTEDCSQCNVLYANVDTAINVAQGQGDETSVCMIIYQNYEQLRQCSLCDTPTEPVRNRYKRQN
APPLQADELFNKCSAFNGRVQDILSTCEATSTLTTSTVSTTSTISTTATQTGPYQFPNIPTGDISCLPKALENSAACLDI
CNVVANALDDYTTFYQGPVRLCEEYGPNRVKRQVDTPLTPYQYAYSLRDSIKACLTCSKNQPNAGSEKLNDLILLCPDDI
KTPEISPCDEQCVEQAPELECSTTCNDLFNYLTQTIDAMSLYNDISAFCMLMYENYSQLRRCSLCEPGTFHDIGVPKKRQ
SEQRNEIYQWLERCPYISETANEVLVPCPVQSGTFEFPPIPTGPVPCFPPVLEDPDQCANICNSIANAIEDYTNFYYQHS
SIVCPSTGAILRREVAAAPENIPVVPFRVKRQSDPFPTEAPITPYEYALSLEGQVRQCFACAENAPNSGSEKLEGLLVQC
PTDFKTPPVPVCNNECLQPGTEDCSQCNILYANVDTAINVAQGKGDEASVCIIVYQNYEQLRQCSLCDTPTEPVRNRYKR
QNAPPLQADELFNKCSAFNGRVQDILSTCEATSTLTTSTASITSTISTTATQTGSYEFPNIPTGDIPCVPVVLDTVQACQ
DLCDPIADAIESYTTFMFGASSPVCSPRNKRQLDLLERQRAPQFSPYDYALQLESDIRACFACAENAPNPGAAKLEQLLS
DCPNDFKTPTLPQCNTDCLEYIIGDECVECDKLFTDINSVIFIASDNGDLLTICLTIYQHYEQLRRCNTCNTIGINKRQA
YGAMVEAYMNMCPAFNGRVEEVLERCTTSTTLTEEPTSTGATSGTETVSSTVSSATSSVPSVPPNPNEDDQCLPNALLSS
SACSAYCETVYYEYRDAYCFVPSTNPPVRPVKRQSFPSYDMVWERQDKVNKCLACSEVNGNSFASQIRDEIAPCPGLYKT
SLPACSENCIDLPSVMPLCEQICTDVYNNLFNAARHKAKRQGTLEDYYCSTVSLNFLIINQCLLCTEDTAFKDQILSFAS
QCPSVNSDTWMDACEISSSSESSSIEASTSTDTSQTETVSSSITSASSSGPSVPPNPNEDDQCFPSLLLSSSACSSYCET
VYNAYSQVYCFITSDETLWERQNRFNLCLACSEVNNNPYADRLRKEIEPCPELYKSSVPPCSEKCIDVPPVMPRCEQICQ
QVYDNLPLFARRMAKRQGTMDNYYCSMIAGNFIMINQCLLCTEDAKFKDRINLYERNCLFMNSDSWMDACEISSSSESSS
IEASTSTDSSQTETVSSSITSASSSVPSVPPNPNEDDQCLPSLLLSSVACSDYCETIYNWYRGAYCFVPSTNPPVNRIKR
QSFPNYDAVWERQDQINKCLACSELNSNSFATQLRDEIAPCPGLYKNSLPACSEKCIDVPSVMPQCEQICDNVYGYLFNV
PRHKVKRQGDAEYYSCTVVSSNFLIINQCLLCTEDTAFKDRILSYASQCPSVNSDTWMEACEIPSSSESSSIEASTSTDS
SQTETVSSSITSASSSVPSVPPNPNEDDQCLPNVLLSSSACSAYCETVYNGYRDLYCFVPSINPPVRPVRPVKRQSSPSY
RPVWERQDQINKCLACSELNSNSFASQIRDEIASCPGLYKNSLPACSEKCIDVPSVMPRCQQICNDVYSYLFNVPRHKVK
RQGDAEYYSCTVVSSNFLIINQCLFCNEDATFKDRIFLFASRCPSVNSDTWMEACEISSSSESSSIEASTSTDSSQTETV
SSSITSASSSVPSVPPNPNEDDQCLPNALLSSAGCSHYCETVYYEYKDVSCFVPLENPPVRPAKRQSFPSYDMVWRRQEK
INVCLTCSEVNSNSFAPLIRDEIAPCSELYKSSLSPCSEKCIDVPSVMPRCAQICNEVYDNFFAVVRHKVKRQGTLDGYY
CGVVGFNFLIMNQCLLCTKDNGLKNEIRSYASQCPSVNSDTWMEACEIFSSSESSSIEASTSTDTSETESTTDSITSNAS
NTDSASGSATESITSVESSSDSASATASDSASDISTATESSSDSASTTASDSSTATESSSDSASTTASDSASDSTTAIES
SSDSASTTASDSSTAIESSSDSASDTTSDSPTATDSSSDSASDTASDSTTATESSSDSASATASDSASDSSTATDSSSDS
ASTTASDSSTATESSSDSASTTASDSASDSTTAIESSSDSASTTASDSSTAIESSSDSASDTTSDSPTATDSSSDSASDT
ASDSTIATESSSDSASATASDSASDSSTATDSSSDSASTTASDSSTATESSSDSASTTASDSASDSTTAIESSSDSASTT
ASDSSTAIESSSDSASDTTSDSPTATDSSSDSASDTASDSTTATESSSDSASATASDSASDSSTATDSSSDSASTTASDS
STATESSSDSASTTASDSASDSTTAIESSSDSASDTTSDSPTATDSSSDSASATASDSSTATDSSSDSASTTASDSSTAT
ESSSDSASATASDSASDSTTAIESSSDSASETASDSPTAIESSSDSASETASDSTTATESSSDSASTTASDSSTATDSSS
DSASTTASDSSTATESSSDSASATASDSASDSTTATESSSDSASATASDSASDSSTATDSSSDSASTTASDSSTATESSS
DSASTTASDSASDSTTAIESSSDSASTTASDSSTATELSSDSASATASDSASDSSTATESSSDSASATASDSANDSSTAT
ESSSDSASATASDSASDSTSATDSYSDSASATASDSASDSTTAIESSSDSASETASDSPTAIESSSDSASETASDSTTAI
ESSSDSASATASDSASDSTTAIESSSDSASTTASDSATATESSSDSASDTTSDSPTATDSSSDSASDTASDSVTSHQPSA
TGSVSYSFTNIVTSTELSASSTTDTAIESVSTLHSASESSSQTVTDSFTSDGHSAPHSVSEIVTESATSNETSTTDSFSE
IASESASDGITTDESSATPSVSEIISNTATSDGASATTLVIESTSESVIKSVTSDQSSASDSTTSLVSDSATESALESIT
SDKPSSTPLATESVSDSTSATSHQTSDINSASDSITPGITTESNTNTGIITITSTRPSGSTETGTITISDPGAGTITVVV
PPTTGDPIVTITSTRPSEQFDTAIRVPSLQSPGTNTLVISSSSVLSHTATLTLSSDVTHTGIPTISNSDSETMTTVVPPE
GSSLSLHSDSLTTIYLGSSVVSVSFPSASTMTSVIYDSDSSVSFQSSRTMTQPFGNDTHSVNSKNPSPSEPISTPPLEQV
NSSNRVVPALTLILSPFFVLFYFCFW

GO term prediction