Protein
MCA_00738_1
Length
235 amino acids
Gene name: RRP40
Description: Exosome complex component RRP40
Browser: contigA:2303794-2304576+
RNA-seq: read pairs 632, FPKM 33.1, percentile rank 55.3% (100% = highest expression)
Protein function
| Annotation: | RRP40 | Exosome complex component RRP40 | |
|---|---|---|---|
| KEGG: | K03681 | RRP40 | exosome complex component RRP40 |
| EGGNOG: | 0PKPF | RRP40 | exosome complex exonuclease Rrp40 |
| SGD closest match: | S000005502 | RRP40 | Exosome complex component RRP40 |
| CGD closest match: | CAL0000191551 | orf19.3304 | Exosome non-catalytic core subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05444_1 | 63.98% | 236 | 4e-111 | MIA_05444_1 |
| A0A0J9X875_GEOCN | 59.74% | 231 | 1e-100 | Similar to Saccharomyces cerevisiae YOL142W RRP40 Exosome non-catalytic core component OS=Geotrichum candidum GN=BN980_GECA05s00417g PE=4 SV=1 |
| A0A170QZF0_9ASCO | 55.13% | 234 | 7e-89 | Rrp40p OS=Sugiyamaella lignohabitans GN=RRP40 PE=4 SV=1 |
| UniRef50_A0A170QZF0 | 55.13% | 234 | 2e-85 | Rrp40p n=4 Tax=Saccharomycetales TaxID=4892 RepID=A0A170QZF0_9ASCO |
| A0A1E3PQ77_9ASCO | 46.75% | 231 | 1e-75 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49890 PE=4 SV=1 |
| A0A060SXA6_BLAAD | 48.26% | 230 | 5e-75 | ARAD1A07854p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A07854g PE=4 SV=1 |
| Q6C3P8_YARLI | 43.40% | 235 | 5e-68 | YALI0E33121p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E33121g PE=4 SV=1 |
| RRP40_YEAST | 42.01% | 219 | 2e-51 | Exosome complex component RRP40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP40 PE=1 SV=2 |
| A0A1D8PCE7_CANAL | 44.33% | 203 | 2e-47 | Exosome non-catalytic core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3304 PE=4 SV=1 |
| A0A1E4TDR4_9ASCO | 35.57% | 149 | 2e-22 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_11350 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0207
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
1
50
100
150
200
235
Detailed signature matches
-
-
SSF50249 (Nucleic a...)
-
no IPR
Unintegrated signatures
Protein sequence
>MCA_00738_1 MSSDSIILPGDISKLNEIIDENPSVRLGPGLFQNAVTDPVPVKAGYLTSSRAGKNNSTVYIESNSKRYIPALRDNVIGVV QARHSEGFRVLLQEFSQPVQLGQFAFPNATKKNRVNLQPGSIVYGRISSADPNIETEMECVNSSTGQADGYGELKGGYLI NVSLAYARMLHFKGGPLLTALGSLVSFEIVIGLNGKVWINASDVLTTWKIARCVELGQKWRVEDIEENIAKILNS
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003723 RNA binding
Cellular Component
None predicted.