Protein

MCA_00735_1

Length
1,497 amino acids

Gene name: CHD1

Description: Chromo domain-containing protein 1

Browser: contigA:2294758-2299326-

RNA-seq: read pairs 1854, FPKM 15.3, percentile rank 34.6% (100% = highest expression)

Protein function

Annotation:CHD1Chromo domain-containing protein 1
KEGG:K11367CHD1 chromodomain-helicase-DNA-binding protein 1 [EC:3.6.4.12]
EGGNOG:0PH1ZPGUG_04323chromodomain helicase
SGD closest match:S000000966CHD1Chromo domain-containing protein 1
CGD closest match:CAL0000187175orf19.3035Chromatin-remodeling ATPase

Protein alignments

%idAln lengthE-value
MIA_05441_174.38%12880.0MIA_05441_1
A0A0J9XD92_GEOCN72.10%11290.0Similar to Saccharomyces cerevisiae YER164W CHD1 Nucleosome remodeling factor that functions in regulation of transcription elongation OS=Geotrichum candidum GN=BN980_GECA11s02111g PE=4 SV=1
A0A060T717_BLAAD62.07%11520.0ARAD1B16522p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B16522g PE=4 SV=1
Q6CDI0_YARLI60.41%11670.0YALI0C00363p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C00363g PE=4 SV=1
A0A1E3PG17_9ASCO56.60%12120.0Uncharacterized protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_11323 PE=4 SV=1
A0A1D8PCZ6_CANAL55.48%11860.0Chromatin-remodeling ATPase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3035 PE=4 SV=1
UniRef50_B9W7B756.23%11470.0Chromodomain protein 1, putative n=19 Tax=Saccharomycetales TaxID=4892 RepID=B9W7B7_CANDC
A0A1E4TIT4_9ASCO57.14%11410.0Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_22820 PE=4 SV=1
CHD1_YEAST53.91%11890.0Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
A0A161HF73_9ASCO65.93%9510.0Chromatin-remodeling ATPase CHD1 OS=Sugiyamaella lignohabitans GN=CHD1 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1394

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Domain
1 200 400 600 800 1000 1200 1497

Detailed signature matches

  1. Domain IPR016197
    Chromo domain-like
    1. SSF54160 (Chromo do...)
  2. Domain IPR000953
    Chromo/chromo shadow domain
    1. PS50013 (CHROMO_2)
    2. SM00298 (chromo_7)
  3. Domain IPR023780
    Chromo domain
    1. PF00385 (Chromo)
  4. Domain IPR027417
    P-loop containing nucleoside triphosphate hydrolase
    1. SSF52540 (P-loop co...)
  5. Domain IPR014001
    Helicase superfamily 1/2, ATP-binding domain
    1. PS51192 (HELICASE_A...)
    2. SM00487 (ultradead3)
  6. Domain IPR000330
    SNF2-related, N-terminal domain
    1. PF00176 (SNF2_N)
  7. Domain IPR001650
    Helicase, C-terminal
    1. PS51194 (HELICASE_CTER)
    2. SM00490 (helicmild6)
    3. PF00271 (Helicase_C)
  8. Domain IPR025260
    Domain of unknown function DUF4208
    1. PF13907 (DUF4208)
    2. SM01176 (DUF4208_2)
  9. SITE IPR023779
    Chromo domain, conserved site
    1. PS00598 (CHROMO_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:1.10.10.60
  2. G3DSA:2.40.50.40
  3. G3DSA:3.40.50...
  4. G3DSA:3.40.50...
  5. cd00024 (CHROMO)
  6. cd00046 (DEXDc)
  7. cd00079 (HELICc)
  8. mobidb-lite (disord...)

Residue annotation

  1. histone binding si...
  2. histone binding si...
  3. ATP binding site c...
  4. putative Mg++ bind...
  5. nucleotide binding...
  6. ATP-binding site c...

Protein sequence

>MCA_00735_1
MSTKSSIPSDFYENPSLYGLRRSSRAHNPPDRFQVEEELPRRSRKKSSIISDSSEDDGDDSDQVTNASRRRKQKKPKSKK
HSRNSEDIYESFSPYDPNASSAKHNNSSDEDDDDEFFNNQKEASRRSRKRQKIQKSGSSTPQYTPTRFSSRQSKVVNYNI
DASIDDADLMDSEDEAYANSNAVQDYIVEDPTESIDIIVDHRQIEGATSRDPKKDIEYLIKWQGISHIHNTWEPYDNLKN
RKGVKRVENYIKNFVLPENLYLSDPEMFKDDFEVFSIEMNKRRDEYNVFKTVERIVASQRVTTENNHTKLEYFVKWKGLT
YHLSTWEDAELIAQMAPKEVEMFQSRLNSKIAPYHSTIYNEANRPRFEKLTEQPSFVKGGELRDFQLTGLNWMAFLWSRN
ENGILADEMGLGKTVQTVAFLSWLVYARKQNGPFLVVVPLSTMSAWQETLELWAPDLNVIVYNGNDESRKMIRHYEFFVN
NNPKKVKFNVLLTTYEYSIRDKAELGAIKWQYLAVDEAHRLKNPESNLAITLSELRIANRLLITGTPLQNNIKELIALIN
FLKGGQSNNSFREFEEIDLETGSENQEELIRDLHKSLQPFILRRLKKDVEKSLPSKTERILRVEMSDMQTEYYRNIISRN
FEALNAGATGGNQMSLLNIMIELKKASNHPYLFPNAEDRYIASNGGVRSKEVYIKGLIMNSGKMVLLDKLLTRLKKDGHR
VLIFSQMVRVLDILADYLVIKGYKYQRLDGTVPSYTRKTLIDHYNAPGSEDFVFLLSTRAGGLGINLMTADTVILFDSDW
NPQADLQAMARAHRIGQKNHVMVYRFVSKDTVEEEILERAKRKMVLEYAVISMGVTYQKKTTESEKDASSAELSAILKFG
AGNMFKDNNNQKKLEDMNLDDVLNHAEDHVGAEAQFSQSHLGGEDFLRQFEVTDYKADVKWDDIIPPEELAKIKAEEQKR
KEEEFMSEQISLFGKRKAALKSTGKLVESDNDADMDDDYDDDDDPSAVLVKTKGRGGRSTVRKEAEDLNILSEKEVRQMY
KAILRYGDISTMWDKLFSDGTLPNRKPSLVKAAFQDLMDACRKQIEIEKAKRQEALAALASNEQSPNGTPDANGNDNKKS
NYLLRRKEKKAILFTFMGVKGVNAELAIQRPEDMALLRDFVPSENSLEWRIPRIVKPVHGWTCEWTDLEDSRLLVGVKKY
GYGAWTNIRDDPVLGMGDKIFLEEHRVEKKQQRGDSSTNGEKVLAKMPGSVHLGRRVDYLISLIKEDGSSANMNGDSMAK
KVGSKANGVLSNGRKPGSPSSPSGLAQNSRGATPNTNSSGMARSGKSSSSSNSSKHRSSISSRPGSSATNGGSPPRRVSS
SNGTSASSSSLKTSSGSDKPVSSTVANNVAEDESDESVEYESMDEQYCKAQLRPVRRSLRTLKQGNSEGLSRKDYLATLK
KEMITVGEFIEERVAKEKEMDKEKLKKHLWSFASFFWPRKVASPKIRAMYQKVSKST

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005524 ATP binding

Cellular Component

None predicted.