Protein
MCA_00562_1
Length
210 amino acids
Browser: contigA:1744168-1744873-
RNA-seq: read pairs 601, FPKM 35.2, percentile rank 57.3% (100% = highest expression)
Protein function
| KEGG: | K12836 | U2AF1 | splicing factor U2AF 35 kDa subunit |
|---|---|---|---|
| EGGNOG: | 0PHGA | PGUG_04247 | splicing factor U2AF |
| CGD closest match: | CAL0000188024 | orf19.53 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_00410_1 | 70.68% | 191 | 1e-102 | MIA_00410_1 |
| A0A060T9K3_BLAAD | 67.36% | 193 | 2e-99 | ARAD1D15796p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D15796g PE=4 SV=1 |
| A0A0J9X2Q9_GEOCN | 62.91% | 213 | 1e-98 | Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA01s05048g PE=4 SV=1 |
| A0A1E3PSN7_9ASCO | 63.73% | 204 | 4e-96 | Splicing factor U2AF 35 kDa subunit OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_48924 PE=4 SV=1 |
| UniRef50_D5GAX0 | 62.50% | 192 | 1e-89 | Uncharacterized protein n=29 Tax=Eukaryota TaxID=2759 RepID=D5GAX0_TUBMM |
| Q6C2P0_YARLI | 59.38% | 192 | 6e-87 | YALI0F06292p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F06292g PE=4 SV=1 |
| A0A1E4TFY4_9ASCO | 37.28% | 169 | 2e-40 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_108999 PE=4 SV=1 |
| A0A1D8PDF7_CANAL | 41.61% | 137 | 1e-29 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.53 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0216
Protein family membership
- U2 auxiliary factor small subunit (IPR009145)
Domains and repeats
-
Domain
-
Domain
1
20
40
60
80
100
120
140
160
180
200
210
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_00562_1 MASYLANIHGTEQDKVHCSFFYKIGACRHGDKCSRGHIKPAYSQTIICPNLFQNPEYDPDNTMTEKEMEEYFLTFYEDLF CEAAKFGEVEEMIVCENNNDHLIGNVYIRFKMEQDAQSALENFSNRWYNGKPIYCELSPVTDFKEACCRQHESKKCKRAG HCNFIHAKRPPEQFLKELELSQLKYLRMTGKEVQSESESEDDSYRRRHRR
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0046872 metal ion binding
Cellular Component
GO:0089701 U2AF