Protein
MCA_00498_1
Length
683 amino acids
Browser: contigA:1573687-1575739-
RNA-seq: read pairs 602, FPKM 10.9, percentile rank 27.3% (100% = highest expression)
Protein function
| EGGNOG: | 0PQ07 | retrograde regulation protein 1 | |
|---|---|---|---|
| SGD closest match: | S000005428 | RTG1 | Retrograde regulation protein 1 |
| CGD closest match: | CAL0000175785 | RTG1 | Rtg1p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9X8K3_GEOCN | 46.01% | 276 | 2e-39 | Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA05s06830g PE=4 SV=1 |
| UniRef50_A0A0J9X8K3 | 46.01% | 276 | 4e-36 | Uncharacterized protein n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X8K3_GEOCN |
| MIA_06225_1 | 57.26% | 117 | 8e-30 | MIA_06225_1 |
| A0A060SZ07_BLAAD | 45.45% | 209 | 1e-26 | ARAD1A15972p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A15972g PE=4 SV=1 |
| A0A161HL88_9ASCO | 46.43% | 112 | 1e-23 | Rtg1p OS=Sugiyamaella lignohabitans GN=RTG1 PE=4 SV=1 |
| Q6C201_YARLI | 43.01% | 186 | 8e-21 | YALI0F11979p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F11979g PE=4 SV=1 |
| RTG1_YEAST | 39.84% | 123 | 2e-17 | Retrograde regulation protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTG1 PE=1 SV=2 |
| A0A1E3PEX8_9ASCO | 38.61% | 101 | 7e-18 | Uncharacterized protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_4068 PE=4 SV=1 |
| Q5APP3_CANAL | 50.00% | 84 | 8e-16 | Rtg1p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RTG1 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0141
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
600
683
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
-
mobidb-lite (disord...)
Residue annotation
-
DNA binding region...
-
E-box/N-box specif...
-
dimerization inter...
Protein sequence
>MCA_00498_1 MSGSGTPFIKMEDTSDNYYYNTSNNSNSQQLQQRGQQQQYQQQGDSSFINNSGINSAISSPITSAANTSNVTNVLSPELL SYASPSFGPNMSGNEPGGANYGGAYLDESDLLDLDAVNSPDINNSMNNITSNNNAQIPPLYNSNSNNNSNNDPNSLANAA AASIGFSTTPSQPIIGSPSILNNKYNNNSGFYGQQTPQISESTSPFDEFMLNQNMKKPQIQQQQLPSNPSSPSIQNASIP QKALWFKQRQLQLQQQQQQQQQQQQSSIAGSPSQYGMTQITPSSPQLVKQQINSPPGGPGDLRPTFSSPPHALRFLHDNG IGSGASSPVGSVGSYADFGLSPSAKPPILAHTPTNNTNGGLIPNKGTSKKVSGKKNMMGGTSSSLLNQSSTAGLSSPVGA TSKSLNEDSSSLLAERRRRRRESHNAVERRRRDNINEKIQELAFLVPDELLYSTTPTSLTGEPITSPGGTSNQPSLTLTK DGKPNKGTILTKSVEYIRHLQTIIDEQNSKELEMQDMVHHLQRQLGVELTVFTHTSAEILLAKLRGVPLPGSTGSNSNNT SSFGILGGGNDNNTTNNNNSNNKNQNLDDDMDPEDPTGLMLNFADSLDDDGENLQLSGPGPIHLRDQNNQQQQQQQQQQQ QMLSPSSGSGGGGGYTPSSDYNTSSNNVMLTDYDQANEQYLIS
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0046983 protein dimerization activity
Cellular Component
None predicted.