Protein
MCA_00363_1
Length
271 amino acids
Description: weakly similar to RNA polymerase II subunit B1 CTD phosphatase Rtr1
Browser: contigA:1146769-1147667-
RNA-seq: read pairs 595, FPKM 27.0, percentile rank 49.7% (100% = highest expression)
Protein function
| Annotation: | weakly similar to RNA polymerase II subunit B1 CTD phosphatase Rtr1 | ||
|---|---|---|---|
| KEGG: | K20827 | RPAP2 | RNA polymerase II subunit B1 CTD phosphatase RPAP2 [EC:3.1.3.16] |
| EGGNOG: | 0PICR | PGUG_03803 | Rtr1/RPAP2 family |
| SGD closest match: | S000000941 | RTR1 | RNA polymerase II subunit B1 CTD phosphatase RTR1 |
| CGD closest match: | CAL0000178934 | orf19.3659 | RNA polymerase II subunit B1 CTD phosphatase |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01583_1 | 58.40% | 262 | 6e-120 | MIA_01583_1 |
| A0A0J9X3M6_GEOCN | 48.81% | 252 | 2e-81 | Similar to Saccharomyces cerevisiae YER139C RTR1 RNA polymerase II subunit B1 CTD phosphatase OS=Geotrichum candidum GN=BN980_GECA02s00945g PE=4 SV=1 |
| UniRef50_A0A0J9X3M6 | 48.81% | 252 | 3e-78 | Similar to Saccharomyces cerevisiae YER139C RTR1 RNA polymerase II subunit B1 CTD phosphatase n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X3M6_GEOCN |
| A0A060T5E7_BLAAD | 38.55% | 249 | 1e-51 | ARAD1C04884p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C04884g PE=4 SV=1 |
| A0A1E3PS45_9ASCO | 37.92% | 240 | 8e-51 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_48442 PE=4 SV=1 |
| A0A167EU39_9ASCO | 36.33% | 256 | 2e-48 | Rtr1p OS=Sugiyamaella lignohabitans GN=RTR1 PE=4 SV=1 |
| A0A1E4TH51_9ASCO | 34.64% | 179 | 2e-33 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2756 PE=4 SV=1 |
| A0A1D8PPG0_CANAL | 29.15% | 295 | 6e-24 | RNA polymerase II subunit B1 CTD phosphatase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3659 PE=4 SV=1 |
| Q6CG71_YARLI | 32.70% | 211 | 2e-23 | YALI0B00308p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B00308g PE=4 SV=1 |
| RTR1_YEAST | 27.11% | 225 | 5e-21 | RNA polymerase II subunit B1 CTD phosphatase RTR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTR1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0626
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
271
Detailed signature matches
Protein sequence
>MCA_00363_1 MSMDVTFNYVLPEGMAYDDFYAGDTRSYYIKRFASVISPYYRPGTLTKSEVDKIMLNLLSFMVETVDNYFLKFAARFLTP DDFDDIVTERNIIHTCGYPLCAKVPVNAKGQYKIEYKHKGFSFMHPYLTKYCSKEHAQASMFYQKQLSTDPVFLRSDITY VPYGQSPYEQQTASLEELEYISKLENITLQQAARQFAIRAVNAVKSQIESTTNQTISQQQEEDGINKLVDKMEVIKITER DPNDTTMDDLVGVDDELIGDPNAVEGYKAKN
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.