Protein
MCA_00317_1
Length
231 amino acids
Browser: contigA:962324-963082-
RNA-seq: read pairs 627, FPKM 33.4, percentile rank 55.6% (100% = highest expression)
Protein function
| EGGNOG: | 0PGNM | PGUG_01813 | Small nuclear ribonucleoprotein |
|---|---|---|---|
| SGD closest match: | S000001448 | MSL1 | U2 small nuclear ribonucleoprotein B'' |
| CGD closest match: | CAL0000179488 | orf19.7375 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9XH86_GEOCN | 42.69% | 253 | 9e-60 | Similar to Saccharomyces cerevisiae YBR119W MUD1 U1 snRNP A protein OS=Geotrichum candidum GN=BN980_GECA17s02001g PE=4 SV=1 |
| UniRef50_A0A0J9XH86 | 42.69% | 253 | 2e-56 | Similar to Saccharomyces cerevisiae YBR119W MUD1 U1 snRNP A protein n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XH86_GEOCN |
| A0A060TA81_BLAAD | 45.74% | 223 | 1e-57 | ARAD1C43428p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C43428g PE=4 SV=1 |
| A0A1E3PIL0_9ASCO | 41.85% | 227 | 2e-53 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_83312 PE=4 SV=1 |
| Q6C8A0_YARLI | 38.94% | 226 | 8e-49 | YALI0D21450p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D21450g PE=4 SV=1 |
| MIA_01641_1 | 40.17% | 229 | 7e-39 | MIA_01641_1 |
| A0A167FI36_9ASCO | 35.64% | 202 | 3e-27 | Mud1p OS=Sugiyamaella lignohabitans GN=MUD1 PE=4 SV=1 |
| A0A1E4TKV9_9ASCO | 31.84% | 223 | 2e-27 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_85611 PE=4 SV=1 |
| A0A1D8PKC7_CANAL | 42.53% | 87 | 8e-20 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.7375 PE=4 SV=1 |
| MSL1_YEAST | 37.04% | 81 | 1e-11 | U2 small nuclear ribonucleoprotein B'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSL1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0121
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
231
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
RNA binding site c...
Protein sequence
>MCA_00317_1 MATETETKEISPNETVYVRNLNEKIKIPELKESLKSLFSKYGNVVDVIAHKNIRMRGQAFVVYDSVDSAEKALKELNQHE IHGKPMSINFAQSKSDVTVQRQTPEEFDKHKQERLAKKEVTEKIFDNLKSQSVKRKASGKSQQGSKKSKVINEVLPPNKL LLLQNLPPGIQSQTLEDIYEKYNGFIEVRLVAIRRVAFVEFRNEEDAIKAKEETAGLKLDGSDVVVNYAKK
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.