Protein
MCA_00310_1
Length
966 amino acids
Description: Mediator complex, subunit Med1
Browser: contigA:943261-946233+
RNA-seq: read pairs 735, FPKM 9.4, percentile rank 25.0% (100% = highest expression)
Protein function
| Annotation: | Mediator complex, subunit Med1 |
|---|
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01650_1 | 54.59% | 458 | 5e-156 | MIA_01650_1 |
| A0A0J9X609_GEOCN | 34.02% | 438 | 2e-59 | Mediator of RNA polymerase II transcription subunit 1 OS=Geotrichum candidum GN=BN980_GECA02s07336g PE=3 SV=1 |
| UniRef50_A0A0J9X609 | 34.02% | 438 | 4e-56 | Mediator of RNA polymerase II transcription subunit 1 n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X609_GEOCN |
| A0A060T891_BLAAD | 36.59% | 205 | 3e-28 | Mediator of RNA polymerase II transcription subunit 1 OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D09086g PE=3 SV=1 |
| Q6C9S6_YARLI | 35.68% | 199 | 2e-26 | Mediator of RNA polymerase II transcription subunit 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D08712g PE=3 SV=1 |
| A0A167FGY8_9ASCO | 46.67% | 90 | 5e-18 | Mediator of RNA polymerase II transcription subunit 1 OS=Sugiyamaella lignohabitans GN=AWJ20_2912 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0128
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
600
700
800
900
966
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_00310_1 MNEKYYNPLAIDHSKKDKSNVLDQIFSLFTSVPGRVSEQNITRLALRYEFEVIKENTSEFRRQISLGGRMILIDIEASLP TEQLEQVTFSLSSIDEPSDERHSFTSQAVNPSINQIILSALRKPRLDQFAKIFSFLACADRISDSGVDCFRALDEISHTL FLIYESSPQLFSDLSTTWYGIPEFNVNNLLGLGLWYWQSHRHAFKVLEHKMDRLHKQKRASSNGNTNKNPQFHDPFHHDS SSNNQANNNNSNNGNKNFEENAKYEREQHALLKELSGIGNVSDQPYYFQKYMLRWTVRPIGDTAIQHLEHLEPPPSNMSK IPTSIGATSAAYPFANGNSAHSGKLPRRSPYAIRYSTEWLPNSSNNQGVPGSSSSSGSQQVAINIDTGLVEQWAPDPEFR PVSGEFVLLLEPPVYFPRHMATQMDAVFEQDSTSYLNNTFVNSRRRVFGPNKESSSKMDESRHSVSRDGDVEMTDTFHSG RDTNREGSSAGAGSGSQTDGASVLLGSGFAHGGNTAEAASSFFDGNHENTSSDEFMDLEINFSSFIPYSFVKVVEIPVSH PKNLPNIILNLRKCILLDTLCRSLNLHELSVPYDGTDIDLSAHARRNTFAGSINLNKGSNVGINPMASNTYGTTINIGNV NNNSRLNPLQQQQQQGQFRRQFQQQQKLQQQQQLQDQQNSESKPQSKGSNQDDISRSQAHSLQPIATQDTEAEDDNEEGL DSDLLLMDRLLKEAIEMEEEEETAQGSNENDSLNPDASGQVNISMSNLESPLQVNITLIEDMENANSQQQQQQQSDTTNP LSVNEAVHIVVSIPALHNFGFWVTPKVKSSGTLGFSVSHIGFSVTKTGKHGNTRPPRVSREGSTMQFSMDNNSSNIKSDL NRSNSQNAKIPITIKEEGGLDDPASILESVFDSSNQSNGNENNGTGTNSLGWDIDWKGIQSKLENSLELTEDLGLVCKYA CHLLCK
GO term prediction
Biological Process
GO:0006357 regulation of transcription from RNA polymerase II promoter
Molecular Function
GO:0001104 RNA polymerase II transcription cofactor activity
Cellular Component
GO:0016592 mediator complex