Protein

MCA_00301_1

Length
128 amino acids

Gene name: RPL40A

Description: Ubiquitin-60S ribosomal protein L40; cleaved to yield ubiquitin and ribosomal protein L40A

Browser: contigA:921816-922599-

RNA-seq: read pairs 60408, FPKM 5786.1, percentile rank 99.7% (100% = highest expression)

Protein function

Annotation:RPL40AUbiquitin-60S ribosomal protein L40; cleaved to yield ubiquitin and ribosomal protein L40A
KEGG:K02927RP-L40e large subunit ribosomal protein L40e
EGGNOG:0QEEQubiquitin-60S ribosomal protein L40 fusion protein
SGD closest match:S000001410RPL40AUbiquitin-60S ribosomal protein L40
CGD closest match:CAL0000178202UBI3Ubiquitin-ribosomal 40S subunit protein S31 fusion protein

Protein alignments

%idAln lengthE-value
MIA_01336_1100.00%1284e-91MIA_01336_1
Q6C2D7_YARLI97.66%1284e-90YALI0F08745p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F08745g PE=4 SV=1
UniRef50_B6QKR097.66%1281e-86Ubiquitin UbiA, putative n=4 Tax=saccharomyceta TaxID=716545 RepID=B6QKR0_TALMQ
A0A1E3PF69_9ASCO96.88%1281e-89Ubiquitin-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_61794 PE=4 SV=1
RL40A_YEAST96.09%1282e-89Ubiquitin-60S ribosomal protein L40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL40A PE=1 SV=1
A0A060SZM2_BLAAD96.09%1281e-88ARAD1C09262p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C09262g PE=4 SV=1
A0A0F7RSR8_GEOCN96.09%1281e-88Similar to Saccharomyces cerevisiae YIL148W RPL40A Ubiquitin-ribosomal 60S subunit protein L40A fusion protein OS=Geotrichum candidum GN=BN980_GECA06s01506g PE=4 SV=1
Q5A109_CANAL100.00%761e-48Ubiquitin-ribosomal 40S subunit protein S31 fusion protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=UBI3 PE=4 SV=1
A0A167BXV7_9ASCO97.40%777e-49Ubiquitin OS=Sugiyamaella lignohabitans GN=UBI4 PE=4 SV=1
A0A1E4TLU1_9ASCO97.40%771e-48Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_21234 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1918

Protein family membership

Domains and repeats

  1. Domain
  2. Domain
1 20 40 60 80 100 128

Detailed signature matches

  1. Family IPR019956
    Ubiquitin
    1. PR00348 (UBIQUITIN)
  2. Domain IPR029071
    Ubiquitin-related domain
    1. SSF54236 (Ubiquitin...)
  3. Domain IPR000626
    Ubiquitin domain
    1. SM00213 (ubq_7)
    2. PF00240 (ubiquitin)
    3. PS50053 (UBIQUITIN_2)
  4. Domain IPR001975
    Ribosomal protein L40e
    1. SM01377 (Ribosomal_...)
    2. PF01020 (Ribosomal_...)
  5. SITE IPR019954
    Ubiquitin conserved site
    1. PS00299 (UBIQUITIN_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:3.10.20.90
  2. cd01803 (Ubiquitin)

Residue annotation

  1. Ubq - CUE interact...
  2. Ubq - UCH interact...
  3. Ubq - E2 interacti...

Protein sequence

>MCA_00301_1
MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEP
SLKALASKFNCEKAICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK

GO term prediction

Biological Process

GO:0006412 translation

Molecular Function

GO:0003735 structural constituent of ribosome
GO:0005515 protein binding

Cellular Component

GO:0005840 ribosome