MCA_00293_1

Browser: contigA:893463-898968+

RNA-seq: read pairs 2, FPKM 0.0, percentile rank 1.7% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0133

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   1,834 - 1,834

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. Coil
   188 - 208

   COILS
   Coil (Coil)

   1,834 - 1,834

   COILS
   Coil (Coil)
3. NON_CYTOPLASM... (N...)
   21 - 1,811

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
4. SIGNAL_PEPTIDE (Sig...)
   1 - 20

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
5. SIGNAL_PEPTID... (S...)
   16 - 20

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
6. SIGNAL_PEPTID... (S...)
   7 - 15

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
7. SIGNAL_PEPTID... (S...)
   1 - 6

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
8. SignalP-noTM
   1 - 20

   SignalP euk
   SignalP-noTM (SignalP-noTM)
9. TRANSMEMBRANE (Tran...)
   1,812 - 1,833

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
10. mobidb-lite (disord...)
    1,275 - 1,797

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    658 - 698

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    916 - 1,062

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    269 - 434

    MobiDB Lite
    mobidb-lite (disorder_prediction)

Protein sequence

>MCA_00293_1
MNLSVNSFLIFYFLLSNCLASPILLSLQQNEQPLPQHIYDDISTPSETSSLDDSFERLYRRDEPKSPIPNPPLGQRYRCK
PPGILGTAEACAQYCDGVYMYIERNLFSKHNTTKFCNENGGHYNPTFFANHINYLSWCFSCNQYYRVESGQTLRAALGGC
IGSISYSPNIPMCEDKCIKPEHVVSNQCNQARNNIRNMVNSLESLDINLPDYSYRHCYEFTYNFQWISMLKLCNEEPDLI
ARVDVAAEKCDYFNPKEYIETCIETTTTTTTTTTTTTTTTTTTTTTTTTTTTTSETDVSESSQESTITGSSDESFLPSTD
SNPSISKTTTSLSSEPTNSQSEVNTSTEGTETSESQSDGTITSSVDTTGSVDPSNSSDSLSGISSTNSVISSDTSGSQSP
SISSSETTESISDSSMLTSYTDESTATTSATSSSPTFVKTIAAPTGNQFYNCIPYGTLDTADDCSTWCAGVNEALYRDIL
QFTKPYSLCVHPDDANSTSPQPGEYYEYEKAKYHFPRIKLCLQCSETYPNEHEVKLKESLANCSEMPSKDTKVEACEDVC
IKREAITDQYCEENYDFTSQRIDDWVNVPPTTNNHNFFVCRRIFSQWARLSALNICEKFDEALMSKFKTALSKCSLFNQE
FKLMEACEPVSLPTTVTSVGTSHSTATDDTTHSMPSISELSSATTTSATGSSSPFKNSIPAPTGGQTVRCIPHGTLDDSS
SCSSFCSGVVRALELNVLFAHSISHLCVRPDEANSTTPQPGEYYDYGMTRVQFTYMKMCQQCSDTYPNEYRSRLDNLLAD
CSEKPYEINEIYACEDICIRPETITDQYCEENYDFISQEVEKWLNTPPTTGNYNYFMCRRIFGHWARVSLLNICGNFDDE
LMSKFKTALSKCNQFDEEVKLMVACDPVSSSISVTSVETSSTESHSDGELTGSSQETASASDSSSSEYGSSITSTVDSKD
VSDTGSVSPTNIPGSQSVTGTANPSNSFGSLSDGVSSSSINPTNSSGTHSANSTETSSTSTNVEPYETFSISDSSHSTTK
SATTTPATGSSSPFKNSIPAPTRGQTVRCIPHGTLDDSSSCSSFCSGVVRALELNVLFAHSISHLCVRPDEANSTTPQPG
EYYDYAKTRIQFKYMKMCQQCSETYPNEFNARLNSLLADCSKKPYENNEIYACEDICVRPETITDQYCEENYEFISQEIE
KWLNTPPTTGNYNYFMCRRIFDQWARVSLLNMCGKFDDTLMSKFKTALSKCNQFDEEVKLMVACDPVSSSVTVTSVESSS
TSGGSITGTIDSTDVPGTGSINPTNSPGSQSYGTSTSSFHPTDASNIQSFDSTENSLTSTSIESSKEFSGSHASDFTTIA
DEATRSSHQNSTPTTRIDEETTQGSDFGTTRTTDENGSILPQSKKSSSEGSTQGSGQIGPQPNPTQADNDGGQILPQPNP
TQSGNGDGQTLPKSNESQPVNDSNGSNGSNGPDGSNDNSGQVLPQPNGSQSGGNSNGSNGSNGFGGSNENNGQILPQSNE
SQSENDSSDSTKENNGSNGSNDSDSDGSNGFNSLNGSNGSGGSNEDNGQILPGPNESQHGDASSDYTKENNGQPGSDQDP
ENGQIAPNQDTANPNDSNNNDGSNQGDILTDLNQQNNGDLTKTKPDQQNDQKSSQKSSNGDGNGGSNIKSGDKDFANSES
NKSGSGSENLANSQNGDLASHNNADGATNPNSQAGLGSSSSSQNGQSGNNVKDSNNSSSNGNNLGASSNGNDSSSSDMGR
TDGSQQLESDNNGLSGEGDSVNGMNQQPPDLLQIAGTGDNTEQDMLEQVNGAIALSDNSILSLFIFMGMAIIFI

GO term prediction