Protein

MCA_00246_1

Length
972 amino acids

Gene name: RNA14

Description: mRNA 3'-end-processing protein RNA14

Browser: contigA:756089-759008-

RNA-seq: read pairs 2351, FPKM 29.9, percentile rank 52.6% (100% = highest expression)

Protein function

Annotation:RNA14mRNA 3'-end-processing protein RNA14
KEGG:K14408CSTF3 cleavage stimulation factor subunit 3
EGGNOG:0PHT3RNA14component of the cleavage factor IA (CFIA) complex, which is involved in the endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation
SGD closest match:S000004665RNA14mRNA 3'-end-processing protein RNA14
CGD closest match:CAL0000183478RNA14mRNA 3'-end-processing protein RNA14

Protein alignments

%idAln lengthE-value
MIA_05755_157.23%6500.0MIA_05755_1
A0A0J9XB08_GEOCN40.40%7082e-163Similar to Saccharomyces cerevisiae YMR061W RNA14 Component of the cleavage and polyadenylation factor I (CF I) OS=Geotrichum candidum GN=BN980_GECA07s03530g PE=4 SV=1
UniRef50_A0A0J9XB0840.40%7084e-160Similar to Saccharomyces cerevisiae YMR061W RNA14 Component of the cleavage and polyadenylation factor I (CF I) n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XB08_GEOCN
A0A1E3PJY5_9ASCO44.86%5551e-154Suf-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_58290 PE=4 SV=1
A0A167FTY7_9ASCO41.72%6042e-147Rna14p OS=Sugiyamaella lignohabitans GN=RNA14 PE=4 SV=1
A0A060T1Y7_BLAAD43.85%5778e-141ARAD1C27808p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C27808g PE=4 SV=1
RNA14_YARLI39.35%5549e-125mRNA 3'-end-processing protein RNA14 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RNA14 PE=3 SV=1
A0A1E4TG34_9ASCO33.80%4972e-87Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_19630 PE=4 SV=1
RNA14_YEAST30.09%5552e-77mRNA 3'-end-processing protein RNA14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA14 PE=1 SV=2
RNA14_CANAL35.25%3834e-64mRNA 3'-end-processing protein RNA14 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RNA14 PE=3 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0284

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Repeat
1 100 200 300 400 500 600 700 800 900 972

Detailed signature matches

  1. Domain IPR011990
    Tetratricopeptide-like helical domain
    1. G3DSA:1.25.40.10
    2. SSF48452 (TPR-like)
  2. Domain IPR013026
    Tetratricopeptide repeat-containing domain
    1. PS50293 (TPR_REGION)
  3. Domain IPR008847
    Suppressor of forked
    1. PF05843 (Suf)
  4. Repeat IPR003107
    HAT (Half-A-TPR) repeat
    1. SM00386 (hat_new_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. mobidb-lite (disord...)

Protein sequence

>MCA_00246_1
MSSQGDNNSEQAVDLTKPDESKIPQSPAVSTNDSVETKPLTSEAEAATVSLDASTSESNFSSNHDAPQESEQNIEQSNGQ
PHIASIPDKPTESESTTALSVPSAESPKAQSPIPSPATLPQSPATVAREESPSLAEKLDSSSLPSDTDNSKQRSKVLASK
NASQLHQKLLQQQQAKTKNIFIRKPPPHVVPSSQQAPVASVGNKRKRDNDNSLEHIEQKIKKNDQSSARYWIMYLKQMEK
IGQFESLSKAYERATTAFPYSADFWARYIQFQLNNSEFQTAERLFAKCLTKIPNVKLWILYLEYVLRINNVQTGGETARN
TIMQAYKFALDHIGIDRDSGPIWAQYIDFLKSKPTQTTWEQQQKMDLIRKAYREAICIPLSNVESLWHGYNAFENGINKT
TARKFLSEKSSAYMTARSASKEMNTLFDGLFRGGAPLFSYRRHGDVREIQTNKWNSLIEWEKSNPLGYESNSDLAKRVKY
AYKQAAIILWFQPDMWFDAAQYSLDSGDLEDSISLLKIGIEATPTSFLLNYKLAEVYESHNKNAEAQKTYESLIESLKEA
RTQLETELAEFQAQHDSAALGFNPALATQQAKLEGKIELGGKLITSAYTTYMKSVKRMDGIAKARNIFKECRNLPYASHE
IYVASAMMENHNARPDIAIKIFEIGAKRYPTVDYISEYLEFLILINDDTNARALFENSLKKLEGDKEGQKLLYQQFLQYE
AEYGELTALLKLESRYRSLYPEESALDMFFDLKELPRSKSSLYYQNSLRSIRKSVNSTVPSTSFSYGSGVSKGLKVQTSS
TSYLSEMSDSSGDEDEEIQPLGQIGFSDKSSPSIPNIPKFPSNGNNNFNNNNNNNININNNMNNNNNNFRRFNKKLRHDE
MNPNMPGANTMLNPNPNNLKNLGNTMMGLNNNGYNMGVNIENDRYDGMTISTNVNNILKALPPPQTFTLPPFDPSKLVAM
LRDVKIPDHLLR

GO term prediction

Biological Process

GO:0006396 RNA processing
GO:0006397 mRNA processing

Molecular Function

GO:0005515 protein binding

Cellular Component

GO:0005634 nucleus