MCA_00233_1

Browser: contigA:717124-720376-

RNA-seq: read pairs 2547, FPKM 29.0, percentile rank 51.8% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0216

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   1,083 - 1,083

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. Coil
   844 - 864

   COILS
   Coil (Coil)
3. NON_CYTOPLASM... (N...)
   26 - 1,065

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
4. SIGNAL_PEPTIDE (Sig...)
   1 - 25

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
5. SIGNAL_PEPTID... (S...)
   21 - 25

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
6. SIGNAL_PEPTID... (S...)
   9 - 20

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
7. SIGNAL_PEPTID... (S...)
   1 - 8

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
8. SignalP-TM
   1 - 25

   SignalP euk
   SignalP-TM (SignalP-TM)
9. TRANSMEMBRANE (Tran...)
   1,066 - 1,082

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
10. mobidb-lite (disord...)
    139 - 200

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    453 - 1,061

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    218 - 247

    MobiDB Lite
    mobidb-lite (disorder_prediction)

Protein sequence

>MCA_00233_1
MYIHYSFSTSFFITLLLIIIPTSSAEENIIPCTPFLDDTLCGLFCFAFRVGILVPGLNCLYTSSFIGDFVGSICTLCIAA
NSNSTGLTENQIMDRIGDCSKIPTPDPYFCYRSDVPSEYLNDISSIRSKLAKSSTIISDSSSDTVSTTRLSTSTTDPLIS
ESNSSSEYDTGSTSDSFKQSENIESTSTVTDIATTEQSSSTGIGLTTLSADLSQSTTNDILPTSTSSSSDADSISTVNSS
SETSTTSLPFQSFSSPFTSTHNAISSTATSNSHSHFPISQSDTKDSTFIYSSFGKSSITLDPTASFSQSYSHFPSSIMSG
SDFSFTISTIGLPSIPVSIWDPSSVSLPIFTFTLPTGTISTPDIPSITIPTGDFPSITFPPLTFPTYSSDSLSVSFPSSE
DTSLSFSTDDDASSKSISYLDTITFSRYTNSSYNTGVPTWINTYSKNTISSSLNTDSNQNSDSLSATVSQTEPTSSGSTS
PTTKDENSSHSLGSTIGSQSISSLSTDTNASPGSSNRNTNSVSQTVSSGQNSKSFTDSHTSTTTSQGSPESQTTGSFSST
DHASSSFGSHPPGQSQSSSDLTEPSASDSQAQSSTRPPLLTPGPQSETVSESQSQVLSEPSFSADPTASDSFSFSSISSP
VTTLSTRTRSSSSSSSFSEENSSNTSENISSSFNHTMTGILPGDRSSADLSSSSSSPITDTASSSPSATISGSLTGSTSL
GSNSAQSSSNLASNSDSVSASNSASISASDSEMASNSVSVSNTASLSESGSASAVSDSGSTPYASTPVSSNSASVSDFNS
MPASLSDYNSTGPTNPPLNIGAPISAAPQPSGSDENEDNDFENADSTEDNSDSTENNSESTENNSESTDSNSENFDLNDT
ESTNASDNTESNNESESNSNNSSSNESINDQENYDNQNNNSAENTQNSNSQENDSDRQDSQSSENNQKANQNSEQSSSNT
NSNQEEQSKNDSSENDKVSSENSNEENSEENSQQQDSSDNPTEAVILNSNNPTPVQSTLATSAVRSAVVTTSFHPSSYPG
ETTKPTRTRRRRNAASPSLPQASKSSSIQAILLSVLILLGFLI

GO term prediction